Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACATGCTGTACTTGAGATTACCGTAAAGCGAAAGCAGAAAGGCCAATATGGTAACCAAGTTCTTCGTGGAAAGCTTGCCTTGGTTGATCTTGCGGGCAGgttataggaactctatttcattgctagtctaattaatacttgtggaaaaaacaagttgtaaattgtaaatgtaatgttacattctgtgagcag

Basic information

species Zea mays
transcript GRMZM5G837018_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G837018_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os03g56260.1 (Oryza sativa), 5'ss of exon 8
CACATGCTGTACTTGAGATTACCGTAAAGCGAAAGCAGAAAGGCCAATATGGTAACCAAGTTCTTCGTGGAAAGCTTGCCTTGGTTGATCTTGCGGGCAGgttatagga--------actctatttc--attgctagtctaattaatacttgtggaaaaaacaagttgtaaattgtaaatgtaatgttacattctgtgagcag
|||||||||| || ||||| || || |||||||| || ||||| ||||||||||  || |||||||||||||||||||| |||||||| ||||||||||||| |||           ||||  |||   |||| |  ||| |||    | ||   | |||  ||| | ||||  | ||   | || ||| |            
CACATGCTGTCCTGGAGATAACTGTGAAGCGAAAACAAAAAGGACAATATGGTAGTCAGGTTCTTCGTGGAAAGCTTGCGTTGGTTGACCTTGCGGGCAGgtaatacactaatacctactcctttttggattgtttttctcatttcaccctgctaagaaagtaagctataaa--gcaacgcttatattataacag--------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22490695|gb|BU050618.1|BU050618
EST:     GGTAACCAAGTTCTTCGTGGAAAGCTTGCCTTGGTTGATCTTGCGGGCAG                         TGAGAGGGCCTCTGAAACAAACAACTTCGGTCAAAAGCTTAGAGATGGAGC
genomic: GGTAACCAAGTTCTTCGTGGAAAGCTTGCCTTGGTTGATCTTGCGGGCAGgttataggaa ... ctgtgagcagTGAGAGGGCCTCTGAAACAAACAACTTCGGTCAAAAGCTTAGAGATGGAGC
EST: gi|87152314|gb|DY397103.1|DY397103
EST:     GGTAACCAAGTTCTTCGTGGAAAGCTTGCCTTGGTTGATCTTGCGGGCAG                         TGAGAGGGCCTCTGAAACAAACAACTTCGGTCAAAAGCTTAGAGATGGAGC
genomic: GGTAACCAAGTTCTTCGTGGAAAGCTTGCCTTGGTTGATCTTGCGGGCAGgttataggaa ... ctgtgagcagTGAGAGGGCCTCTGAAACAAACAACTTCGGTCAAAAGCTTAGAGATGGAGC