1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CAACCCAACTGGAATAGACCCAACTCCTGAACAGTGGGAGAAAATTGCAGATGTCATTCAAGAGAAAAAGCATATGCCATTCTTTGATGTTGCATATCAGgtgaacgtttttgcttgagtaccttgtctcctacgtatgtatcgcaatatctcttccactgactggtaggctttccttttag
species | Zea mays |
transcript | GRMZM5G836910_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: ATGTCATTCAAGAGAAAAAGCATATGCCATTCTTTGATGTTGCATATCAA GGTTTTGCCAGTGGAAGCCTTGATGAAGATGCATTTTCTGTCAGGCTTTTTEST: gi|26557436|gb|CA829671.1|CA829671
genomic: ATGTCATTCAAGAGAAAAAGCATATGCCATTCTTTGATGTTGCATATCAGgtgaacgttt ... ttccttttagGGTTTTGCCAGTGGAAGCCTTGATGAAGATGCATTTTCTGTCAGGCTTTTT
EST: ATGTCATTCAAGAGAAAAAGCATATGCCATTCTTTGATGTTGCATATCAG GGTTTTGCCAGTGGAAGCCTTGATGAAGATGCATTTTCTGTCAGGCTTTTTEST: gi|32863795|gb|CF003477.1|CF003477
genomic: ATGTCATTCAAGAGAAAAAGCATATGCCATTCTTTGATGTTGCATATCAGgtgaacgttt ... ttccttttagGGTTTTGCCAGTGGAAGCCTTGATGAAGATGCATTTTCTGTCAGGCTTTTT
EST: ATGTCATTCAAGAGAAAAAGCATATGCCATTCTTTGATGTTGCATATCAA GGTTTTGCCAGTGGAAGCCTTGATGAAGATGCATTTTCTGTCAGGCTTTTTEST: gi|78104307|gb|DV522725.1|DV522725
genomic: ATGTCATTCAAGAGAAAAAGCATATGCCATTCTTTGATGTTGCATATCAGgtgaacgttt ... ttccttttagGGTTTTGCCAGTGGAAGCCTTGATGAAGATGCATTTTCTGTCAGGCTTTTT
EST: ATGTCATTCAAGAGAAAAAGCATATGCCATTCTTTGATGTTGCATATCAG GGTTTTGCCAGTGGAAGCCTTGATGAAGATGCATTTTCTGTCAGGCTTTTTEST: gi|5342983|gb|AI795288.1|AI795288
genomic: ATGTCATTCAAGAGAAAAAGCATATGCCATTCTTTGATGTTGCATATCAGgtgaacgttt ... ttccttttagGGTTTTGCCAGTGGAAGCCTTGATGAAGATGCATTTTCTGTCAGGCTTTTT
EST: ATGTCATTCAAGAGAAAAAGCATATGCCATTCTTTGATGTTGCATATCAA GGTTTTGCCAGTGGAAGCCTTGATGAAGATGCATTTTCTGTCAGGCTTTTTEST: gi|32844188|gb|CD983869.1|CD983869
genomic: ATGTCATTCAAGAGAAAAAGCATATGCCATTCTTTGATGTTGCATATCAGgtgaacgttt ... ttccttttagGGTTTTGCCAGTGGAAGCCTTGATGAAGATGCATTTTCTGTCAGGCTTTTT
EST: ATGTCATTCAAGAGAAAAAGCATATGCCATTCTTTGATGTTGCATATCAA GGTTTTGCCAGTGGAAGCCTTGATGAAGATGCATTTTCTGTCAGGCTTTTTEST: gi|32921476|gb|CF026288.1|CF026288
genomic: ATGTCATTCAAGAGAAAAAGCATATGCCATTCTTTGATGTTGCATATCAGgtgaacgttt ... ttccttttagGGTTTTGCCAGTGGAAGCCTTGATGAAGATGCATTTTCTGTCAGGCTTTTT
EST: ATGTCATTCAAGAGAAAAAGCATATGCCATTCTTTGATGTTGCATATCAG GGTTTTGCCAGTGGAAGCCTTGATGAAGATGCATTTTCTGTCAGGCTTTTTEST: gi|32926958|gb|CF031770.1|CF031770
genomic: ATGTCATTCAAGAGAAAAAGCATATGCCATTCTTTGATGTTGCATATCAGgtgaacgttt ... ttccttttagGGTTTTGCCAGTGGAAGCCTTGATGAAGATGCATTTTCTGTCAGGCTTTTT
EST: ATGTCATTCAAGAGAAAAAGCATATGCCATTCTTTGATGTTGCATATCAA GGTTTTGCCAGTGGAAGCCTTGATGAAGATGCATTTTCTGTCAGGCTTTTTEST: gi|32920753|gb|CF025565.1|CF025565
genomic: ATGTCATTCAAGAGAAAAAGCATATGCCATTCTTTGATGTTGCATATCAGgtgaacgttt ... ttccttttagGGTTTTGCCAGTGGAAGCCTTGATGAAGATGCATTTTCTGTCAGGCTTTTT
EST: ATGTCATTCAAGAGAAAAAGCATATGCCATTCTTTGATGTTGCATATCAG GGTTTTGCCAGTGGAAGCCTTGATGAAGATGCATTTTCTGTCAGGCTTTTTEST: gi|32843721|gb|CD983402.1|CD983402
genomic: ATGTCATTCAAGAGAAAAAGCATATGCCATTCTTTGATGTTGCATATCAGgtgaacgttt ... ttccttttagGGTTTTGCCAGTGGAAGCCTTGATGAAGATGCATTTTCTGTCAGGCTTTTT
EST: ATGTCATTCAAGAGAAAAAGCATATGCCATTCTTTGATGTTGCATATCAA GGTTTTGCCAGTGGAAGCCTTGATGAAGATGCATTTTCTGTCAGGCTTTTTEST: gi|32925729|gb|CF030541.1|CF030541
genomic: ATGTCATTCAAGAGAAAAAGCATATGCCATTCTTTGATGTTGCATATCAGgtgaacgttt ... ttccttttagGGTTTTGCCAGTGGAAGCCTTGATGAAGATGCATTTTCTGTCAGGCTTTTT
EST: ATGTCATTCAAGAGAAAAAGCATATGCCATTCTTTGATGTTGCATATCAA GGTTTTGCCAGTGGAAGCCTTGATGAAGATGCATTTTCTGTCAGGCTTTTTEST: gi|32921723|gb|CF026535.1|CF026535
genomic: ATGTCATTCAAGAGAAAAAGCATATGCCATTCTTTGATGTTGCATATCAGgtgaacgttt ... ttccttttagGGTTTTGCCAGTGGAAGCCTTGATGAAGATGCATTTTCTGTCAGGCTTTTT
EST: ATGTCATTCAAGAGAAAAAGCATATGCCATTCTTTGATGTTGCATATCAG GGTTTTGCCAGTGGAAGCCTTGATGAAGATGTATTTTCTGTCAGGCTTTTTEST: gi|13150003|gb|BG320325.1|BG320325
genomic: ATGTCATTCAAGAGAAAAAGCATATGCCATTCTTTGATGTTGCATATCAGgtgaacgttt ... ttccttttagGGTTTTGCCAGTGGAAGCCTTGATGAAGATGCATTTTCTGTCAGGCTTTTT
EST: ATGTCATTCAAGAGAAAAAGCATATGCCATTCTTTGATGTTGCATATCAG GGTTTTGCCAGTGGAAGCCTTGATGAAGATGCATTTTCTGTCAGGCTTTTTEST: gi|32843163|gb|CD982844.1|CD982844
genomic: ATGTCATTCAAGAGAAAAAGCATATGCCATTCTTTGATGTTGCATATCAGgtgaacgttt ... ttccttttagGGTTTTGCCAGTGGAAGCCTTGATGAAGATGCATTTTCTGTCAGGCTTTTT
EST: ATGTCATTCAAGAGAAAAAGCATATGCCATTCTTTGATGTTGCATATCAA GGTTTTGCCAGTGGAAGCCTTGATGAAGATGCATTTTCTGTCAGGCTTTTTEST: gi|32921739|gb|CF026551.1|CF026551
genomic: ATGTCATTCAAGAGAAAAAGCATATGCCATTCTTTGATGTTGCATATCAGgtgaacgttt ... ttccttttagGGTTTTGCCAGTGGAAGCCTTGATGAAGATGCATTTTCTGTCAGGCTTTTT
EST: ATGTCATTCAAGAGAAAAAGCATATGCCATTCTTTGATGTTGCATATCAG GGTTTTGCCAGTGGAAGCCTTGATGAAGATGCATTTTCTGTCAGGCTTTTTEST: gi|32925063|gb|CF029875.1|CF029875
genomic: ATGTCATTCAAGAGAAAAAGCATATGCCATTCTTTGATGTTGCATATCAGgtgaacgttt ... ttccttttagGGTTTTGCCAGTGGAAGCCTTGATGAAGATGCATTTTCTGTCAGGCTTTTT
EST: ATGTCATTCAAGAGAAAAAGCATATGCCATTCTTTGATGTTGCATATCAA GGTTTTGCCAGTGGAAGCCTTGATGAAGATGCATTTTCTGTCAGGCTTTTTEST: gi|6827402|gb|AW331045.1|AW331045
genomic: ATGTCATTCAAGAGAAAAAGCATATGCCATTCTTTGATGTTGCATATCAGgtgaacgttt ... ttccttttagGGTTTTGCCAGTGGAAGCCTTGATGAAGATGCATTTTCTGTCAGGCTTTTT
EST: ATGTCATTCAAGAGAAAAAGCATATGCCATTCTTTGATGTTGCATATCAG GGTTTTGCCAGTGGAAGCCTTGATGAAGATGCATTTTCTGTCAGGCTTTTTEST: gi|32925965|gb|CF030777.1|CF030777
genomic: ATGTCATTCAAGAGAAAAAGCATATGCCATTCTTTGATGTTGCATATCAGgtgaacgttt ... ttccttttagGGTTTTGCCAGTGGAAGCCTTGATGAAGATGCATTTTCTGTCAGGCTTTTT
EST: ATGTCATTCAAGAGAAAAAGCATATGCCATTCTTTGATGTTGCATATCAA GGTTTTGCCAGTGGAAGCCTTGATGAAGATGCATTTTCTGTCAGGCTTTTTEST: gi|32925664|gb|CF030476.1|CF030476
genomic: ATGTCATTCAAGAGAAAAAGCATATGCCATTCTTTGATGTTGCATATCAGgtgaacgttt ... ttccttttagGGTTTTGCCAGTGGAAGCCTTGATGAAGATGCATTTTCTGTCAGGCTTTTT
EST: ATGTCATTCAAGAGAAAAAGCATATGCCATTCTTTGATGTTGCATATCAA GGTTTTGCCAGTGGAAGCCTTGATGAAGATGCATTTTCTGTCAGGCTTTTTEST: gi|91056033|gb|EB166451.1|EB166451
genomic: ATGTCATTCAAGAGAAAAAGCATATGCCATTCTTTGATGTTGCATATCAGgtgaacgttt ... ttccttttagGGTTTTGCCAGTGGAAGCCTTGATGAAGATGCATTTTCTGTCAGGCTTTTT
EST: ATGTCATTCAAGAGAAAAAGCATATGCCATTCTTTGATGTTGCATATCAG GGTTTTGCCAGTGGAAGCCTTGATGAAGATGCATTTTCTGTCAGGCTTTTTEST: gi|26557367|gb|CA829602.1|CA829602
genomic: ATGTCATTCAAGAGAAAAAGCATATGCCATTCTTTGATGTTGCATATCAGgtgaacgttt ... ttccttttagGGTTTTGCCAGTGGAAGCCTTGATGAAGATGCATTTTCTGTCAGGCTTTTT
EST: ATGTCATTCAAGAGAAAAAGCATATGCCATTCTTTGATGTTGCATATCAG GGTTTTGCCAGTGGAAGCCTTGATGAAGATGCATTTTCTGTCAGGCTTTTT
genomic: ATGTCATTCAAGAGAAAAAGCATATGCCATTCTTTGATGTTGCATATCAGgtgaacgttt ... ttccttttagGGTTTTGCCAGTGGAAGCCTTGATGAAGATGCATTTTCTGTCAGGCTTTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAACCCAACTGGAATAGACCCAACTCCTGAACAGTGGGAGAAAATTGCAGATGTCATTCAAGAGAAAAAGCATATGCCATTCTTTGATGTTGCATATCAGgtgaacgtttttgcttgagtaccttgtctcctacgtatgtatcgcaatatctcttccactgactggtaggctttccttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA