Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTTTGTTTCCAGGTGAAAGTGGTGTGGACCAACTCGTCGAAATCATCAAGgtatcaattttacaaatttgtaaactatcttctgcatagacataaattttgatcacacttgatttgattttgcatcgcag

Basic information

species Zea mays
transcript GRMZM5G835235_T04
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G835235_T04 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os01g14860.1 (Oryza sativa), 5'ss of exon 9
CCTTTGTTTCCAGGTGAAAGTGGTGTGGACCAACTCGTCGAAATCATCAAG-
||| ||||||| |||||||||||||| |||||||| || ||||||||||||    ||  ||||| |     || ||   |  |     || | |  ||    | |  ||  | ||| |  |  ||||    ||||||||
CCTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAGgttagtgccaattctggtgtttagttggccttgcgagttgttcggaggtgcagaagtttgtaacattaaaactgatcacacatcgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32859083|gb|CD998764.1|CD998764
EST:     CTTTGTTTCCAGGTGAAAGTGGTGTGGACCAACTCGTCGAAATCATCAAG                         GTCCTTGGTACTCCAACAAGGGAAGAAATTAAATGCATGAACCCGAATTAC
genomic: CTTTGTTTCCAGGTGAAAGTGGTGTGGACCAACTCGTCGAAATCATCAAGgtatcaattt ... tgcatcgcagGTCCTTGGTACTCCAACAAGGGAAGAAATTAAATGCATGAACCCGAATTAC
EST: gi|33093876|gb|CF053870.1|CF053870
EST:     CTTTGTTTCCAGGTGAAAGTGGTGTGGACCAACTCGTCGAAATCATCAAG                         GTCCTTGGTACTCCAACAAGGGAAGAAATTAAATGCATGAACCCGAATTAC
genomic: CTTTGTTTCCAGGTGAAAGTGGTGTGGACCAACTCGTCGAAATCATCAAGgtatcaattt ... tgcatcgcagGTCCTTGGTACTCCAACAAGGGAAGAAATTAAATGCATGAACCCGAATTAC
EST: gi|20803001|gb|BQ294051.1|BQ294051
EST:     CTTTGTTTCCAGGTGAAAGTGGTGTGGACCAACTCGTCGAAATCATCAAG                         GTCCTTGGTACTCCAACAAGGGAAGAAATTAAATGCATGAACCCGAATTAC
genomic: CTTTGTTTCCAGGTGAAAGTGGTGTGGACCAACTCGTCGAAATCATCAAGgtatcaattt ... tgcatcgcagGTCCTTGGTACTCCAACAAGGGAAGAAATTAAATGCATGAACCCGAATTAC
EST: gi|22543122|gb|BU093560.1|BU093560
EST:     GACCAACTCGTCGAAATCATCAAG                         GTCCTTGGTACTCCAACAAGGGAAGAAATTAAATGCATGAACCCGAATTAC
genomic: GACCAACTCGTCGAAATCATCAAGgtatcaattt ... tgcatcgcagGTCCTTGGTACTCCAACAAGGGAAGAAATTAAATGCATGAACCCGAATTAC
EST: gi|32865481|gb|CF005163.1|CF005163
EST:     CTTTGTTTCCAGGTGAAAGGGGTGTGGACCAACTCGTCGAAATCATCAAG                         GTCCTTGGTACTCCAACAAGGGAAGAAATTAAATGCATGAACCCGAATTAC
genomic: CTTTGTTTCCAGGTGAAAGTGGTGTGGACCAACTCGTCGAAATCATCAAGgtatcaattt ... tgcatcgcagGTCCTTGGTACTCCAACAAGGGAAGAAATTAAATGCATGAACCCGAATTAC
EST: gi|32865499|gb|CF005181.1|CF005181
EST:     CTTTGTTTCCAGGTGAAAGTGGTGTGGACCAACTCGTCGAAATCATCAAG                         GTCCTTGGTACTCCAACAAGGGAAGAAATTAAATGCATGAACCCGAATTAC
genomic: CTTTGTTTCCAGGTGAAAGTGGTGTGGACCAACTCGTCGAAATCATCAAGgtatcaattt ... tgcatcgcagGTCCTTGGTACTCCAACAAGGGAAGAAATTAAATGCATGAACCCGAATTAC
EST: gi|26456580|gb|CA828163.1|CA828163
EST:     CTTTGTTTCCAGGTGAAAGTGGTGTGGACCAACTCGTCGAAATCATCAAG                         GTCCTTGGTACTCCAACAAGGGAAGAAATTAAATGCATGAACCCGAATTAC
genomic: CTTTGTTTCCAGGTGAAAGTGGTGTGGACCAACTCGTCGAAATCATCAAGgtatcaattt ... tgcatcgcagGTCCTTGGTACTCCAACAAGGGAAGAAATTAAATGCATGAACCCGAATTAC