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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcaccaatgaaagttcgctgacatgtgtgttgtcttattatctgcattggaagttcgcttatacatcaataaaggttcttacagtagcacgcttcataggcctttgcctattttttaaccaagtgttcttctgaacag

Basic information

species Zea mays
transcript GRMZM5G833389_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G833389_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os01g60190.1 (Oryza sativa), 5'ss of exon 8
GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcaccaatgaaagttcgctgacatgtgtgttgtcttattatctgcattggaagttcgcttatacatcaataaaggttcttacagtagcacgcttcataggcctttgcctattttttaaccaagtgttcttctgaacag
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||||||||  ||| ||  | |        | || | ||  | |   |||| |    || ||||   | | |||   |||     | | | |  |  |  |   ||                                          
GTACGTGTCAACCTGCCGAATGGTGACATGGTTGGTCACACTGGTGATATTGAAGCCACGGTAGTTGCTTGCAAGGCAGCTGACGAAGCCGTTAAGgtgag--cacaaacaaga------caaaatatatgcagaca-gttattt---ctgcaagtcgtcatgtaccgtaatggtaatccctcccct--cctggaacag-----------------------------------------

upper sequence: GRMZM5G833389_T02 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA09G40690.1 (Glycine max), 5'ss of exon 7
GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcaccaatgaaagttcgctgacatgtgtgttgtcttattatctgcattggaagttcgcttatacatcaataaaggttcttacagtagcacgcttcataggcctttgcctattttttaaccaagtgttcttctgaacag
||||| |||||||| ||||||||||||||||| || || || ||||| ||||| || || || || |||||||||||||||||||  ||||| |||||          |||||  ||   |  ||  | |||||    ||| |||  |    ||||| | |||||      | ||| |        ||||    ||  | ||   ||   |||||                         
GTACGCGTCAACCTTCCAAATGGTGACATGGTGGGGCATACAGGTGACATTGAAGCAACAGTTGTGGCTTGCAAGGCAGCTGATGCTGCTGTGAAGgt----------atgaagcttaattttcaaatttgttggagcatt-tctttaaataaagtttg-ttatattctttttaagctc-------tagctgaattttttgggaattctttattt-------------------------

upper sequence: GRMZM5G833389_T02 (Zea mays), 5'ss of exon 8
lower sequence: AT3G08590.2 (Arabidopsis thaliana), 5'ss of exon 6
GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcaccaatgaaagttcgctgacatgtg--tgttgtc--ttattatctgcattggaagttcgcttatacatcaataaaggttcttacagtagcacgcttcataggcctttgcctattttttaaccaagtgttcttctgaacag
|| ||||| |||||||||||||| || ||||| || || |||||||||||||| || || || ||||| ||  | || ||||||   ||||| | |||  ||    ||||  || || | ||||||| |  ||||        || |  | |        || ||||    |   |        || |||                                                      
GTGCGTGTAAACCTGCCAAATGGAGATATGGTGGGGCATACTGGTGATATTGAAGCAACTGTTGTTGCCTGTGAAGCTGCTGATCGTGCTGTGAGGgtatga-tttcaat--aaatttg-tgacatgggaatgttagaaaccgttcttagtagcaatgactcactta-gttttggtgtcctggtttgcag------------------------------------------------------

upper sequence: GRMZM5G833389_T02 (Zea mays), 5'ss of exon 8
lower sequence: AT1G09780.1 (Arabidopsis thaliana), 5'ss of exon 5
GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcaccaatgaaagttcgctgacatgtgtgttgtcttattatctgcattggaagttcgcttatacatcaataaaggttcttacagtagcacgcttcataggcctttgcctattttttaaccaagtgttcttctgaacag
|| || || ||| | |||||||| || ||||| ||||| || ||||||||||| ||||| || ||||| ||| |||| ||||||   ||||| |||||  |        |  |||||   ||||| ||    |   | || || ||  |  |    |  ||||     | | ||| | | |    || |||                                                 
GTGCGAGTTAACATTCCAAATGGAGATATGGTGGGTCATACAGGTGATATTGAAGCCACGGTTGTTGCATGCGAGGCTGCTGATCTTGCTGTGAAGgtatgttt-----tataagtttattgacaagt---cttaatgatgatatgtgtgagtgtgtgactta---gcccacaaatggtttggttgttgcag------------------------------------------------

upper sequence: GRMZM5G833389_T02 (Zea mays), 5'ss of exon 8
lower sequence: Vv08s0056g00200.t01 (Vitis vinifera), 5'ss of exon 7
GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcaccaatgaaagttcgctgacatgtgtgttgtcttattatctgcattggaagttcgcttatacatcaataaaggttcttacagtagcacgcttcataggcctttgcctattttttaaccaagtgttcttctgaacag
|| ||||| ||||| ||||||||||||||||| || |||||||||||||||||||| ||  | || ||||||||||| |||||||||||||| |||||          |||    ||  ||    | | |||| | || | |     |       | |  ||  | ||   |||  ||| | |    | | | ||| |||| | ||| | | |                           
GTTCGTGTTAACCTACCAAATGGTGACATGGTGGGGCACACTGGTGATATTGAGGCTACAATTGTAGCTTGCAAGGCTGCTGATGAAGCTGTCAAGgt----------atggtgctttacttttctatatgttcttttttcaggcataaattgcatacatttccagattggtaa--gttgtca----aactcacttaatagacattt-catgt---------------------------

upper sequence: GRMZM5G833389_T02 (Zea mays), 5'ss of exon 8
lower sequence: EFJ26058 (Selaginella moellendorffii), 5'ss of exon 7
GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcaccaatgaaagttcgctgacatgtgtgttgtcttattatctgcattggaagttcgcttatacatcaataaaggttcttacagtagcacgcttcataggcctttgcctattttttaaccaagtgttcttctgaacag
 || | || ||  | || |||||||||||||||||||||||||| ||| |  |||| ||| | || |||||  | || || ||| | |||||||||||||             ||||| ||  |||        | ||||| ||||  |  || | |   ||     |        |||||| |||                                                      
ATAAGGGTTAATTTACCCAATGGTGACATGGTTGGTCACACTGGAGATCTCAAGGCGACCATTGTGGCTTGTGAAGCGGCCGATAAGGCTGTTAAGgtga-------------agttc-cttgcat--------ttttattttctgtgtcagacgatgtttttctttttt------gttcttgcag------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37401358|gb|CF638042.1|CF638042
EST:     ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
genomic: ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcac ... ttctgaacagATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
EST: gi|51592466|gb|CV071612.1|CV071612
EST:     ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
genomic: ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcac ... ttctgaacagATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
EST: gi|211244472|gb|FL127869.1|FL127869
EST:     ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATTATTTTGGATGCTGTCGAGCAAGTTGGTGGCATTTACCTTGTTACCGCC
genomic: ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcac ... ttctgaacagATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
EST: gi|211242245|gb|FL127865.1|FL127865
EST:     ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
genomic: ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcac ... ttctgaacagATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
EST: gi|211110874|gb|FL478096.1|FL478096
EST:     ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
genomic: ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcac ... ttctgaacagATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
EST: gi|6865073|gb|AW360423.1|AW360423
EST:     CCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
genomic: CCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcac ... ttctgaacagATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
EST: gi|211242243|gb|FL127863.1|FL127863
EST:     ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
genomic: ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcac ... ttctgaacagATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
EST: gi|37378208|gb|CF625776.1|CF625776
EST:     ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
genomic: ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcac ... ttctgaacagATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
EST: gi|60356110|gb|DN223083.1|DN223083
EST:     ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
genomic: ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcac ... ttctgaacagATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
EST: gi|211240006|gb|FL127846.1|FL127846
EST:     ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
genomic: ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcac ... ttctgaacagATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
EST: gi|211242246|gb|FL127866.1|FL127866
EST:     ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATTATTTTGGATGCTGTCGAGCA
genomic: ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcac ... ttctgaacagATTATTTTGGATGCTGTCGAGCA
EST: gi|32945368|gb|CF050187.1|CF050187
EST:     ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ACTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
genomic: ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcac ... ttctgaacagATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
EST: gi|60398692|gb|DN231508.1|DN231508
EST:     ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
genomic: ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcac ... ttctgaacagATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
EST: gi|211021747|gb|FL471425.1|FL471425
EST:     ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
genomic: ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcac ... ttctgaacagATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
EST: gi|37385277|gb|CF629772.1|CF629772
EST:     ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
genomic: ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcac ... ttctgaacagATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
EST: gi|67016297|gb|CO445046.1|CO445046
EST:     ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
genomic: ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcac ... ttctgaacagATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
EST: gi|78544037|gb|DV621535.1|DV621535
EST:     ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
genomic: ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcac ... ttctgaacagATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
EST: gi|211172242|gb|FL456942.1|FL456942
EST:     ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
genomic: ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcac ... ttctgaacagATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
EST: gi|31360915|gb|CD445272.1|CD445272
EST:     ATATTGAGGCCACCGTAGTTGCTTGCAAGGGAGCTGATGAAGCTGTTAAG                         ATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
genomic: ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcac ... ttctgaacagATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
EST: gi|6827946|gb|AW331589.1|AW331589
EST:     ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
genomic: ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcac ... ttctgaacagATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
EST: gi|37393998|gb|CF634267.1|CF634267
EST:     ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
genomic: ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcac ... ttctgaacagATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
EST: gi|211242239|gb|FL127859.1|FL127859
EST:     ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACC
genomic: ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcac ... ttctgaacagATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACC
EST: gi|211242236|gb|FL127856.1|FL127856
EST:     ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
genomic: ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcac ... ttctgaacagATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
EST: gi|211110873|gb|FL478095.1|FL478095
EST:     ATATTGAGGCCMCCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
genomic: ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcac ... ttctgaacagATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
EST: gi|37392229|gb|CF633363.1|CF633363
EST:     A-TGAGGGCCACCGTAGTTGC-TGCAAAGGCAGCTGATGAAGCTGTTAAG                         ATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGT-ANCCGC
genomic: ATTGA-GGCCACCGTAGTTGCTTGC-AAGGCAGCTGATGAAGCTGTTAAGgtgagagcac ... ttctgaacagATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTA-CCGC
EST: gi|211242247|gb|FL127867.1|FL127867
EST:     ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTTAG                         ATTATTTTGGATGCTGTCCAGCAAGTTGGTGGTATTTACCTTGTTTACCGC
genomic: ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcac ... ttctgaacagATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTT-ACCGC
EST: gi|60336942|gb|DN203915.1|DN203915
EST:     ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
genomic: ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcac ... ttctgaacagATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
EST: gi|6637102|gb|AW261374.1|AW261374
EST:     ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGT-ACCGCC
genomic: ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcac ... ttctgaacagATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
EST: gi|37375505|gb|CF624191.1|CF624191
EST:     ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
genomic: ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcac ... ttctgaacagATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
EST: gi|211242242|gb|FL127862.1|FL127862
EST:     ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTT
genomic: ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcac ... ttctgaacagATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTT
EST: gi|67025128|gb|CO453877.1|CO453877
EST:     ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
genomic: ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcac ... ttctgaacagATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
EST: gi|211244471|gb|FL127868.1|FL127868
EST:     ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
genomic: ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcac ... ttctgaacagATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
EST: gi|67022444|gb|CO451193.1|CO451193
EST:     ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
genomic: ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcac ... ttctgaacagATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
EST: gi|211406277|gb|FL082337.1|FL082337
EST:     ATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTRCCGCC
genomic: ATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcac ... ttctgaacagATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
EST: gi|40334760|gb|CK368830.1|CK368830
EST:     ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
genomic: ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcac ... ttctgaacagATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
EST: gi|83278457|gb|DV942465.1|DV942465
EST:     ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
genomic: ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcac ... ttctgaacagATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
EST: gi|4646599|gb|AI491406.2|AI491406
EST:     CGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
genomic: CGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcac ... ttctgaacagATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
EST: gi|20513060|gb|BQ280246.1|BQ280246
EST:     ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
genomic: ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcac ... ttctgaacagATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
EST: gi|32857459|gb|CD997140.1|CD997140
EST:     GTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
genomic: GTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcac ... ttctgaacagATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
EST: gi|44901343|gb|CK827888.1|CK827888
EST:     ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
genomic: ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcac ... ttctgaacagATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
EST: gi|211242238|gb|FL127858.1|FL127858
EST:     ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
genomic: ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcac ... ttctgaacagATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
EST: gi|211242244|gb|FL127864.1|FL127864
EST:     ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
genomic: ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcac ... ttctgaacagATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
EST: gi|67011723|gb|CO440472.1|CO440472
EST:     ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
genomic: ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcac ... ttctgaacagATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
EST: gi|28909600|gb|CB331007.1|CB331007
EST:     ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
genomic: ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcac ... ttctgaacagATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
EST: gi|71330937|gb|DR802275.1|DR802275
EST:     ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAG                         ATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC
genomic: ATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcac ... ttctgaacagATTATTTTGGATGCTGTCGAGCAAGTTGGTGGTATTTACCTTGTTACCGCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTACGTGTCAACCTGCCAAATGGTGACATGGTTGGTCACACTGGTGATATTGAGGCCACCGTAGTTGCTTGCAAGGCAGCTGATGAAGCTGTTAAGgtgagagcaccaatgaaagttcgctgacatgtgtgttgtcttattatctgcattggaagttcgcttatacatcaataaaggttcttacagtagcacgcttcataggcctttgcctattttttaaccaagtgttcttctgaacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT