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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTTGGTTGCGAAGGACAAGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttccttggtcattcgagcaacatcatgaccatttccttaatgttatttttttctgtcttcgttgtgttcactttgcacactttattttgctttttatatag

Basic information

species Zea mays
transcript GRMZM5G825902_T01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G825902_T02 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os12g05650.1 (Oryza sativa), 5'ss of exon 9
GGTTTGGTTGCGAAGGACAAGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttccttggtcattcgagcaacatcatgaccatttccttaatgttatttttttctgtcttcgttgtgtt-cactt-tgcacactttattttgctttttatatag
|| |||||||| |||||||| || ||||| ||||||||||||| |||| | |||||||| |||||||||||              |||  |    | | || || | || ||   |   || |||     |||  |     |   |||| |  |    |||   |||  |  ||||||
GGCTTGGTTGCAAAGGACAAATTCCATGTGAGTTACAGAGGTGCAAAATTGAACAGCTCATTATCTCAGgt--------------attgcaatgccttgattactactttct-gttaaaatctttggtcatctcagcaacatcatacttatatatctcttaacatgccatc-atatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32859294|gb|CD998975.1|CD998975
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|5846978|gb|AW000057.1|AW000057
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|211056798|gb|FL037810.1|FL037810
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|60394392|gb|DN227262.1|DN227262
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|211056797|gb|FL037809.1|FL037809
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|6194531|gb|AW146635.1|AW146635
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|5762240|gb|AI967288.1|AI967288
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|40485703|gb|CK394697.1|CK394697
EST:     GTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: GTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|60354178|gb|DN221151.1|DN221151
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATATCAG                         GCGCTGTCCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|60394317|gb|DN227187.1|DN227187
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|16922165|gb|BM075455.1|BM075455
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|71762075|gb|DR960012.1|DR960012
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|5915218|gb|AW052859.1|AW052859
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|5871577|gb|AW018048.1|AW018048
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|5846763|gb|AI999846.1|AI999846
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|6031251|gb|AW076258.1|AW076258
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|5597232|gb|AI891225.1|AI891225
EST:     AGTTTCATGTAAGTTCCAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|5296356|gb|AI783126.1|AI783126
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|5006113|gb|AI712175.1|AI712175
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|24934311|gb|CA452529.1|CA452529
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|5915187|gb|AW052828.1|AW052828
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|31356321|gb|CD440678.1|CD440678
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGC-TGCGTTATTACC
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACC
EST: gi|18177029|gb|BM378239.1|BM378239
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|32859012|gb|CD998693.1|CD998693
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|6827302|gb|AW330945.1|AW330945
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|24767769|gb|CA402905.1|CA402905
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|31353042|gb|CD437399.1|CD437399
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|148950230|gb|EC895780.2|EC895780
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATTTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|5871067|gb|AW017508.1|AW017508
EST:     AGTTTCATGTAAGTTCCAGAGGTGGAAAATTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|6194493|gb|AW146597.1|AW146597
EST:     TTTCATGTAAGTTACAGAGGTNNGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: TTTCATGTAAGTTACAGAGGT--GGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|194716957|gb|FK934116.1|FK934116
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|5739701|gb|AI947277.1|AI947277
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|16927072|gb|BM080141.1|BM080141
EST:     AGTTTCATGTAAGTTACAGAGGGGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|32859295|gb|CD998976.1|CD998976
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|211399224|gb|FL447437.1|FL447437
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|5871038|gb|AW017614.1|AW017614
EST:     AGTTTCATGTAAGTTCCAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|31360452|gb|CD444809.1|CD444809
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAN                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|16927075|gb|BM080144.1|BM080144
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|4775819|gb|AI664824.1|AI664824
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCGATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|166428057|gb|EG077617.1|EG077617
EST:     GGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: GGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|5296224|gb|AI782904.1|AI782904
EST:     ACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCCAAGGCCTGAGACAGATGAA
genomic: ACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|149074677|gb|EE163095.2|EE163095
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|5929057|gb|AW056349.1|AW056349
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACT-AACAGCTCCTTATTTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|6031249|gb|AW076256.1|AW076256
EST:     GTTTCCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: GTTT-CATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|8929966|gb|BE224730.1|BE224730
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCCCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|211335494|gb|FL454139.1|FL454139
EST:     TTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: TTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|6031454|gb|AW076356.1|AW076356
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGTTTGGTTGCGAAGGACAAGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttccttggtcattcgagcaacatcatgaccatttccttaatgttatttttttctgtcttcgttgtgttcactttgcacactttattttgctttttatatag

- - - - - - - - - - - - - - - - - - -  GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTC