1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GATCTGTCAACTGGGTGGCTTTATTGTGATCCTGGTCCAATGTTTAAGCCAGAGCATTACTCATTGGGAGAGTCGGTGCCACATTGGgtgaggaaaacagttcttttgctcaatttattcattttaatattatttcttgtactaagtctctaagatggcatctttgcaatgttcccaatcataaaaa...
species | Zea mays |
transcript | GRMZM5G825110_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CAATGTTTAAGCCAGAGCATTACTCATTGGGAGAGTCGGTGCCACATTGG TTCCCATGGAAAGATCTAGCCATTATGCCTGTGCAGTGGCATGCTTTAGCCEST: gi|78121240|gb|DV539624.1|DV539624
genomic: CAATGTTTAAGCCAGAGCATTACTCATTGGGAGAGTCGGTGCCACATTGGgtgaggaaaa ... ctcttaacagTTCCCATGGAAAGATCTAGCCATTATGCCTGTGCAGTGGCATGCTTTAGCC
EST: CAATGTTTAAGCCAGAGCATTACTCATTGGGAGAGTCGGTGCCACATTGG TTCCCATGGAAAGATCTAGCCATTATGCCTGTGCAGTGGCATGCTTTAGCCEST: gi|71426082|gb|DR807132.1|DR807132
genomic: CAATGTTTAAGCCAGAGCATTACTCATTGGGAGAGTCGGTGCCACATTGGgtgaggaaaa ... ctcttaacagTTCCCATGGAAAGATCTAGCCATTATGCCTGTGCAGTGGCATGCTTTAGCC
EST: AAATGTTTAAGCCAGAGCATTACTCATTGGGAGAGTCGGTGCCACATTGG TTCCCATGGAAAGATCTAGCCATTATGCCTGTGCAGTGGCATGCTTTAGCCEST: gi|60338336|gb|DN205309.1|DN205309
genomic: -AATGTTTAAGCCAGAGCATTACTCATTGGGAGAGTCGGTGCCACATTGGgtgaggaaaa ... ctcttaacagTTCCCATGGAAAGATCTAGCCATTATGCCTGTGCAGTGGCATGCTTTAGCC
EST: CAATGTTTAAGCCAGAGCATTACTCATTGGGAGAGTCGGTGCCACATTGG TTCCCATGGAAAGATCTAGCCATTATGCCTGTGCAGTGGCATGCTTTAGCCEST: gi|60344634|gb|DN211607.1|DN211607
genomic: CAATGTTTAAGCCAGAGCATTACTCATTGGGAGAGTCGGTGCCACATTGGgtgaggaaaa ... ctcttaacagTTCCCATGGAAAGATCTAGCCATTATGCCTGTGCAGTGGCATGCTTTAGCC
EST: CAATGTTTAAGCCAGAGCATTACTCATTGGGAGAGTCGGTGCCACATTGG TTCCCATGGAAAGATCTAGCCATTATGCCTGTGCAGTGGCATGCTTTAGCCEST: gi|76014866|gb|DT942036.1|DT942036
genomic: CAATGTTTAAGCCAGAGCATTACTCATTGGGAGAGTCGGTGCCACATTGGgtgaggaaaa ... ctcttaacagTTCCCATGGAAAGATCTAGCCATTATGCCTGTGCAGTGGCATGCTTTAGCC
EST: CAATGTTTAAGCCAGAGCATTACTCATTGGGAGAGTCGGTGCCACATTGG TTCCCATGGAAAGATCTAGCCATTATGCCTGTGCAGTGGCATGCTTTAGCCEST: gi|76021500|gb|DT948670.1|DT948670
genomic: CAATGTTTAAGCCAGAGCATTACTCATTGGGAGAGTCGGTGCCACATTGGgtgaggaaaa ... ctcttaacagTTCCCATGGAAAGATCTAGCCATTATGCCTGTGCAGTGGCATGCTTTAGCC
EST: CAATGTTTAAGCCAGAGCATTACTCATTGGGAGAGTCGGTGCCACATTGG TTCCCATGGAAAGATCTAGCCATTATGCCTGTGCAGTGGCATGCTTTAGCCEST: gi|76287485|gb|DV027053.1|DV027053
genomic: CAATGTTTAAGCCAGAGCATTACTCATTGGGAGAGTCGGTGCCACATTGGgtgaggaaaa ... ctcttaacagTTCCCATGGAAAGATCTAGCCATTATGCCTGTGCAGTGGCATGCTTTAGCC
EST: CAATGTTTAAGCCAGAGCATTACTCATTGGGAGAGTCGGTGCCACATTGG TTCCCATGGAAAGATCTAGCCATTATGCCTGTGCAGTGGCATGCTTTAGCC
genomic: CAATGTTTAAGCCAGAGCATTACTCATTGGGAGAGTCGGTGCCACATTGGgtgaggaaaa ... ctcttaacagTTCCCATGGAAAGATCTAGCCATTATGCCTGTGCAGTGGCATGCTTTAGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATCTGTCAACTGGGTGGCTTTATTGTGATCCTGGTCCAATGTTTAAGCCAGAGCATTACTCATTGGGAGAGTCGGTGCCACATTGGgtgaggaaaacagttcttttgctcaatttattcattttaatattatttcttgtactaagtctctaagatggcatctttgcaatgttcccaatcataaaaa
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