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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGTGAGACCATTTGGAGTATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAGgtatactgaagaagctacaagatagaaacctgtttattaaccttccaaagaaaactgcttattgctttacaagagatgatcacaagtagtacttagaaagtgaataatgtgtacttttgtgctaacaatcaccatgatactgtaggatgtaccttcataaactcaggacaactgacattgttgccaatttcttcag

Basic information

species Zea mays
transcript GRMZM5G824831_T08
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G824831_T03 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os02g42320.1 (Oryza sativa), 5'ss of exon 6
TGGTGTGAGACCATTTGGAGTATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAGgtatactgaagaagctacaagatagaaac-ctgtttattaaccttccaaagaaaactgcttattgctttacaagagatgatcacaagtagtacttagaaagtgaataatgtgtacttttgtgctaacaatcaccatgatactgtaggatgtaccttcataaactcaggacaactgacattgttgccaatttcttcag
|||||| |||||||||||||||||| | |||||||| ||||| |||||||||||||| ||| |||||||||||| | ||   |||| |  |||||   | || |||  |  |         |||| |  |   | | ||        |  || |||  |  |  |  ||||||                                                                                              
TGGTGTAAGACCATTTGGAGTATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAGgtatgcagat--agctgcgtgataggggctcttttttgttgcaactgtttcaaaattaatgtgtacgttg---acccttgtctcaataataagctgcaaagtgtt--------------------------------------------------------------------------------------------

upper sequence: GRMZM5G824831_T03 (Zea mays), 5'ss of exon 8
lower sequence: Vv01s0011g01960.t01 (Vitis vinifera), 5'ss of exon 7
TGGTGTGAGACCATTTGGAGTATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAGgtatactgaaga-agctacaagatagaaacctgtttattaaccttccaaagaaaactgcttattgctttacaagagatgatcacaagtagtacttagaaagtgaataatgtgtacttttgtgctaacaatcaccatgatactgtaggatgtaccttcataaactcaggacaactgacattgttgccaatttcttcag
|||||| || || |||||||||||||||||| ||||||| | |||||||||||| || || ||||| ||||||  |  |    |  |   || ||  || |  ||||||||  | | |   ||   || |  |  |||| |||  |   ||   | | | |  |  |   |  ||                                                                                            
TGGTGTAAGGCCCTTTGGAGTATCACTGTTGGTTGCTGGTTTTGATGACAATGGTCCACAATTGTACCAGgtactcaaattttaagtttgagttattaagcattttattaatatactatttaa---tgttcttcccttttcaaatg--catttaatggattggtgggttgggcaa--------------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148956338|gb|EC902144.2|EC902144
EST:     TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|148952476|gb|EC898302.2|EC898302
EST:     TATCACTGTTGATTGCTGGGTATGATGACAATGACCCGCAGTTGTATCAC                         GATGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCA
EST: gi|71447361|gb|DR828411.1|DR828411
EST:     TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|211269953|gb|FL444406.1|FL444406
EST:     TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTTTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|149076954|gb|EE165611.2|EE165611
EST:     TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|211264909|gb|FL208725.1|FL208725
EST:     TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAG                         GTTGATCCCTCAAGATCATA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATA
EST: gi|6952542|gb|AW424610.1|AW424610
EST:     TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|148973074|gb|EE024136.2|EE024136
EST:     ATGGCCCGCAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGNNNNN
genomic: ATGGCCCGCAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|78112696|gb|DV531090.1|DV531090
EST:     TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|148987620|gb|EE031494.2|EE031494
EST:     TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATC
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATC
EST: gi|5268558|gb|AI770522.1|AI770522
EST:     TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAC                         GTTGATCCCTCAGGATCATACTTCTCCTGTAAGGCATCAGCCATGGTAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|71445140|gb|DR826190.1|DR826190
EST:     TATCACTGTTGATTGCTGGGTATGATGACCATGGCCCGCAGTTGTATCAA                         GTTGATCCCTCAGGATCATACTTCTCCCTGGA-GGCATCAGCCATGGGAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCC-TGGAAGGCATCAGCCATGGGAAA
EST: gi|211149323|gb|FL312581.1|FL312581
EST:     TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|32830197|gb|CD969875.1|CD969875
EST:     TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|211252215|gb|FK953396.1|FK953396
EST:     TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|6194486|gb|AW146590.1|AW146590
EST:     TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAG                         GTTGATCCCTCCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTC-AGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAA
EST: gi|78112697|gb|DV531091.1|DV531091
EST:     TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAANGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|67024880|gb|CO453629.1|CO453629
EST:     TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|32795340|gb|CD947576.1|CD947576
EST:     TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|211321302|gb|FL273340.1|FL273340
EST:     TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|211153309|gb|FL164197.1|FL164197
EST:     TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCGCAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA