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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGTTAGAAGACGCGGCCTCAAAGTTTCTGTTGCTGGCATTCCAAAGACTATTGATAATGACATCCCTgtaatatgtttctccacattttagtgatattttggtggaaaaaatggaagatgacatttgacatgatcacatgaaccttgtgtgcacgaactcactgttacccatgtttcag

Basic information

species Zea mays
transcript GRMZM5G816636_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G816636_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os06g05860.1 (Oryza sativa), 5'ss of exon 8
GAAGTTAGAAGACGCGGCCTCAAAGTTTCTGTTGCTGGCATTCCAAAGACTATTGATAATGACATCCCTgtaatatgtttctccacattttagtgatattttggtggaaaaaatggaagatgacatttgacatgatcacatgaaccttgtgtgcacgaactcactgttacccatgtttcag
||  |||||||||| || ||||| ||| |||||||||||||||||||||| ||||||||||| || || |||||    || | |||||| || ||| |||  |||   ||  ||||   || |    | |  || |   |    || | ||||||                          
GAGATTAGAAGACGTGGTCTCAAGGTTGCTGTTGCTGGCATTCCAAAGACGATTGATAATGATATACCAgtaatgatctttttcacattatattgacattagggtatgaattatggtgtat-atgcataatttgtttcta----ccctatgtgcag-------------------------