Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTGGAAATCTGGTGCTATAACTACTTTAGGCCAAGGTGGTAGCGACTTGATTGCTATAACCATTGGTAAAGCCTTGGGACTGAGAGAAATTCAGgtctatgtttagtctgaatagatatttaataaaccatatttttctttatgaggaaaaaagttgagacaatagttgatgctaatcactaagctagcatgtg...

Basic information

species Zea mays
transcript GRMZM2G700866_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G700866_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os01g70300.2 (Oryza sativa), 5'ss of exon 6
GGCTGGAAATCTGGTGCTATAACTACTTTAGGCCAAGGTGGTAGCGACTTGATTGCTATAACCATTGGTAAAGCCTTGGGACTGAGAGAAATTCAGgtctatg-tttagtctgaatagatattta------ataaaccatatttttctttatgaggaaaaaagttgagacaatagttgatgctaatca--ctaagctagcatgtg--------------------------------------------
||||||||||| || ||| |||| |||||||||| |||||| || ||||||| ||||| |||||||||||||||| ||||  ||||||||||||||||| ||| |  ||||| |||| |  |||       | |||| | | ||         ||      | || |     |   | ||||| || |   ||    ||||                                                
GGCTGGAAATCAGGCGCTGTAACCACTTTAGGCCGAGGTGGCAGTGACTTGACTGCTACAACCATTGGTAAAGCCCTGGGGTTGAGAGAAATTCAGgtccatggtgaagtctaaatataattttgctcttcacaaacaaaaattagagcctacagtttgctattttaatttgtttatcatgctgattagcttagtggagcagaaagtcactacctactttgtctgaaagcataccactgcctgtcatag