1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CCCAGCGGAAGCAAGTGCAATGGGGCCAAACCCAACAGCAGACCAGTTCGTCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAGgtagagcacattcacatcgcgctacaagcctacaatcccaaattgtgaggtggcctcggtttcgggtaaagatttgagtgagcttgggctttatctaaac...
species | Zea mays |
transcript | GRMZM2G553379_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAG CATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCAEST: gi|149109077|gb|EE293126.2|EE293126
genomic: TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAGgtagagcaca ... ttctttgcagCATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
EST: TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAG CATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCAEST: gi|88751159|gb|DY535300.1|DY535300
genomic: TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAGgtagagcaca ... ttctttgcagCATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
EST: TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAG CATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
genomic: TCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAGgtagagcaca ... ttctttgcagCATTTTTCCTGTGGCAGCAGGCGGGAGGTTGGTGGAAGGTGCAGCAGCGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCAGCGGAAGCAAGTGCAATGGGGCCAAACCCAACAGCAGACCAGTTCGTCTTCCTCGTGCTTCGTGATAAGGGAAGCTGCCCCAACAACAAATATCAGgtagagcacattcacatcgcgctacaagcctacaatcccaaattgtgaggtggcctcggtttcgggtaaagatttgagtgagcttgggctttatctaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC