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CTTGTGAAGCTACCACGATCACCTACTGTTGATGATATTCTAAAGAAGTACTTGGAACACCGGGCAAAGAAGGATGGCAAgtgagtattctattgctgacatggattcattttctatatgcattttcgctcttggtcttgggcaatagccttacctgaaccatgagcctcttttgtatac...
species | Zea mays |
transcript | GRMZM2G484880_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GATGATATTCTAAAGAAGTACTTGGAACACCGGGCAAAGAAGGATGGCAA GATAAATGACTCCTATGCTGAGATTCTGAAAGGATTACGCTGCTACTTTGAEST: gi|93284202|gb|EB676466.1|EB676466
genomic: GATGATATTCTAAAGAAGTACTTGGAACACCGGGCAAAGAAGGATGGCAAgtgagtattc ... tgtgttgaagGATAAATGACTCCTATGCTGAGATTCTGAAAGGATTACGCTGCTACTTTGA
EST: GATGATATTCTAAAGAAGTACTTGGAACACCGGGCAAAGAAGGATGGCAA GATAAATGACTCCTATGCTGAGATTCTGAAAGGATTACGCTGCTACTTTGAEST: gi|31997933|gb|CD661838.1|CD661838
genomic: GATGATATTCTAAAGAAGTACTTGGAACACCGGGCAAAGAAGGATGGCAAgtgagtattc ... tgtgttgaagGATAAATGACTCCTATGCTGAGATTCTGAAAGGATTACGCTGCTACTTTGA
EST: GATGATATTCTAAAGAAGTACTTGGAACNCCGGGCAAAGAAGGATGGCAA GATAAATGACTCCTATGCTGAGATTCTGAAAGGATTACGCTGCTACTTTGAEST: gi|60358481|gb|DN225454.1|DN225454
genomic: GATGATATTCTAAAGAAGTACTTGGAACACCGGGCAAAGAAGGATGGCAAgtgagtattc ... tgtgttgaagGATAAATGACTCCTATGCTGAGATTCTGAAAGGATTACGCTGCTACTTTGA
EST: GATGATATTCTAAAGAAGTACTTGGAACACCGGGCAAAGAAGGATGGCAA GATAAATGACTCCTATGCTGAGATTCTGAAAGGATTACGCTGCTACTTTGAEST: gi|211056265|gb|FL131318.1|FL131318
genomic: GATGATATTCTAAAGAAGTACTTGGAACACCGGGCAAAGAAGGATGGCAAgtgagtattc ... tgtgttgaagGATAAATGACTCCTATGCTGAGATTCTGAAAGGATTACGCTGCTACTTTGA
EST: ATGATATTCTAAAGAAGTACTTGGAACACCGGGCAAAGAAGGATGGCAA GATAAATGACTCCTATGCTGAGATTCTGAAAGGATTACGCTGCTACTTTGAEST: gi|60343282|gb|DN210255.1|DN210255
genomic: ATGATATTCTAAAGAAGTACTTGGAACACCGGGCAAAGAAGGATGGCAAgtgagtattc ... tgtgttgaagGATAAATGACTCCTATGCTGAGATTCTGAAAGGATTACGCTGCTACTTTGA
EST: GATGATATTCTAAAGAAGTACTTGGAACACCGGGCAAAGAAGGATGGCAA GATAAATGACTCCTATGCTGAGATTCTGAAAGGATTACGCTGCTACTTTGAEST: gi|37386752|gb|CF630565.1|CF630565
genomic: GATGATATTCTAAAGAAGTACTTGGAACACCGGGCAAAGAAGGATGGCAAgtgagtattc ... tgtgttgaagGATAAATGACTCCTATGCTGAGATTCTGAAAGGATTACGCTGCTACTTTGA
EST: GATGATATTCTAAAGAAGTACTTGGAACACCGGGCAAAGAAGGATGGCAA GATAAATGACTCCTATGCTGAGATTCTGAAAGGATTACGTTGCTACTTTGAEST: gi|33103032|gb|CF062992.1|CF062992
genomic: GATGATATTCTAAAGAAGTACTTGGAACACCGGGCAAAGAAGGATGGCAAgtgagtattc ... tgtgttgaagGATAAATGACTCCTATGCTGAGATTCTGAAAGGATTACGCTGCTACTTTGA
EST: ACTTGGAACACCGGGCAAAGAAGGATGGCAA GATAAATGACTCCTATGCTGAGATTCTGAAAGGATTACGCTGCTACTTTGAEST: gi|211399030|gb|FL440153.1|FL440153
genomic: ACTTGGAACACCGGGCAAAGAAGGATGGCAAgtgagtattc ... tgtgttgaagGATAAATGACTCCTATGCTGAGATTCTGAAAGGATTACGCTGCTACTTTGA
EST: ATGATATTCTAAAGAAGTACTTGGAACACCGGGCAAAGAAGGATGGCAA GATAAATGACTCCTATGCTGAGATTCTGAAAGGATTACGCTGCTACTTTGAEST: gi|76016791|gb|DT943961.1|DT943961
genomic: ATGATATTCTAAAGAAGTACTTGGAACACCGGGCAAAGAAGGATGGCAAgtgagtattc ... tgtgttgaagGATAAATGACTCCTATGCTGAGATTCTGAAAGGATTACGCTGCTACTTTGA
EST: GATGATATTCTAAAGAAGTACTTGGAACACCGGGCAAAGAAGGATGGCAA GATAAATGACTCCTATGCTGAGATTCTGAAAGGATTACGCTGCTACTTTGAEST: gi|78544095|gb|DV621593.1|DV621593
genomic: GATGATATTCTAAAGAAGTACTTGGAACACCGGGCAAAGAAGGATGGCAAgtgagtattc ... tgtgttgaagGATAAATGACTCCTATGCTGAGATTCTGAAAGGATTACGCTGCTACTTTGA
EST: GATGATATTCTAAAGAAGTACTTGGAACACCGGGCAAAGAAGGATGGCAA GATAAATGACTCCTATGCTGAGATTCTGAAAGGATTACGCTGCTACTTTGAEST: gi|22546502|gb|BU098813.1|BU098813
genomic: GATGATATTCTAAAGAAGTACTTGGAACACCGGGCAAAGAAGGATGGCAAgtgagtattc ... tgtgttgaagGATAAATGACTCCTATGCTGAGATTCTGAAAGGATTACGCTGCTACTTTGA
EST: TGGAACCCCGGGCAAAGAAGGATGGCAA GATAAATGACTCCTATGCTGAGATTCTGAAAGGATTACGCTGCTACTTTGAEST: gi|76912438|gb|DV164732.1|DV164732
genomic: TGGAACACCGGGCAAAGAAGGATGGCAAgtgagtattc ... tgtgttgaagGATAAATGACTCCTATGCTGAGATTCTGAAAGGATTACGCTGCTACTTTGA
EST: GATGATATTCTAAAGAAGTACTTGGAACACCGGGCAAAGAAGGATGGCAA GATAAATGACTCCTATGCTGAGATTCTGAAAGGATTACGCTGCTACTTTGEST: gi|71331879|gb|DR802817.1|DR802817
genomic: GATGATATTCTAAAGAAGTACTTGGAACACCGGGCAAAGAAGGATGGCAAgtgagtattc ... tgtgttgaagGATAAATGACTCCTATGCTGAGATTCTGAAAGGATTACGCTGCTACTTTG
EST: GATGATATTCTAAAGAAGTACTTGGAACACCGGGCAAAGAAGGATGGCAA GATAAATGACTCCTATGCTGAGATTCTGAAAGGATTACGCTGCTACTTTGEST: gi|71438521|gb|DR819571.1|DR819571
genomic: GATGATATTCTAAAGAAGTACTTGGAACACCGGGCAAAGAAGGATGGCAAgtgagtattc ... tgtgttgaagGATAAATGACTCCTATGCTGAGATTCTGAAAGGATTACGCTGCTACTTTG
EST: GATGATATTCTAAAGAAGTACTTGGAACACCGGGCAAAGAAGGATGGCAA GATAAATGACTCCTATGCTGAGATTCTGAAAGGATTACGCTGCTACTTTGAEST: gi|5917408|gb|AW054199.1|AW054199
genomic: GATGATATTCTAAAGAAGTACTTGGAACACCGGGCAAAGAAGGATGGCAAgtgagtattc ... tgtgttgaagGATAAATGACTCCTATGCTGAGATTCTGAAAGGATTACGCTGCTACTTTGA
EST: GATGATATTCTAAAGAAGTACTTGGAACNCCGGGCAAAGAAGGATGGCAA GATAAATGACTCCTATGCTGAGATTCTGAAAGGATTACGCTGCTACTTTGA
genomic: GATGATATTCTAAAGAAGTACTTGGAACACCGGGCAAAGAAGGATGGCAAgtgagtattc ... tgtgttgaagGATAAATGACTCCTATGCTGAGATTCTGAAAGGATTACGCTGCTACTTTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTGTGAAGCTACCACGATCACCTACTGTTGATGATATTCTAAAGAAGTACTTGGAACACCGGGCAAAGAAGGATGGCAAgtgagtattctattgctgacatggattcattttctatatgcattttcgctcttggtcttgggcaatagccttacctgaaccatgagcctcttttgtatac
- - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG