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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAAGATGCTGGCACATATTGGCGAACAATGTTGCCATTTTCATATGCTGTTGTATCTGGTGCTATTGGATCTTGCTCAGTCTTGTTTGCAAAATCATTgtaggttatattttatttcatcaaaatccatgcatctgggatgcttattctttcagatttatttggtgctgactaccatgtgttgttccccactccctgtttcctgtccag

Basic information

species Zea mays
transcript GRMZM2G477146_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G477146_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os02g31874.1 (Oryza sativa), 5'ss of exon 8
CAAAAGATGCTGGCACATATTGGCGAACAATGTTGCCATTTTCATATGCTGTTGTATCTGGTGCTATTGGATCTTGCTCAGTCTTGTTTGCAAAATCATTgtaggttatattttatttcatcaaaatccatgcatctgggatgcttattctttcagatttatttggtgctgactaccatgtgttgttccccactccctgtttc--ctgtccag
| ||| || ||||| || ||||||| ||| ||||||||||||| |||||| ||||||||||||||||||||||||| || ||||| ||||||||||||||||| ||||  || ||||  ||  | ||  |||    |  | |||   ||     | |||| |||  | |||| |    | | ||  |  |  ||   |  |    || |  ||
CGAAACATACTGGCTCACATTGGCGGACATTGTTGCCATTTTCTTATGCTATTGTATCTGGTGCTATTGGATCTTGTTCTGTCTTATTTGCAAAATCATTgtaagttactttgtattg-attgagatttatgttcatttgctgca-gtttgaatatattt-tttaat-ctgattgatttttttttctttcgtcttttttctgtggctatttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67033412|gb|CO462161.1|CO462161
EST:     GTTGTATCTGGTGCTATTGGATCTTGCTCAGTCTTGTTTGCAANATCATT                         GTCTAACATGCTGAGACTGACGATGAGCAGCAGATACGAGTTCCATAGCTG
genomic: GTTGTATCTGGTGCTATTGGATCTTGCTCAGTCTTGTTTGCAAAATCATTgtaggttata ... tcctgtccagGTCTAACATGCTGAGACTGACGATGAGCAGCAGATACGAGTTCCATAGCTG
EST: gi|32847829|gb|CD987510.1|CD987510
EST:     ATTGTATCTGGTGCTATTGGATCTTGCTCAGTCTTGTTTGCAAAATCATT                         GTCTAACATGCTGAGACTGACGATGAGCAGCAGATACGAGTTCCATAGCTG
genomic: GTTGTATCTGGTGCTATTGGATCTTGCTCAGTCTTGTTTGCAAAATCATTgtaggttata ... tcctgtccagGTCTAACATGCTGAGACTGACGATGAGCAGCAGATACGAGTTCCATAGCTG