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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAGgtaacttctaacttttttggtctgtgtttttacaagttaaggacaaggttgtagcatctagtttgcaaaataatatctgaacctcatttttttgattcta...

Basic information

species Zea mays
transcript GRMZM2G466947_T01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G466947_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os08g41250.2 (Oryza sativa), 5'ss of exon 2
CATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAGgtaactt-ctaacttttttggtctgtgtttttacaagttaaggacaaggttgtagcatctagtttgcaaaataatatctgaacctcatttttttgattcta
  || || |||||||| || | | ||||||||||||| ||||||||||| ||||| ||||||||||| | | | | ||||||||||| || ||   |   |   ||  ||    || | | |           ||| |  |||   |     | | | |  |     | ||||||       ||
TTTCGTGCCTGAAATCCTCGAAAGCAAACACCATAGTGCTATCTGGGCTCAGTGGTAGTGGCAAAACTATTCTCTTCTACCAGgtaattttctgtttcaatcattcaatgcccatatatggttcctttttatgtgt-gtttctcactccttcagtgacagttattttttatttttgatggatta

upper sequence: GRMZM2G466947_T01 (Zea mays), 5'ss of exon 8
lower sequence: Vv01s0127g00270.t01 (Vitis vinifera), 5'ss of exon 3
-CATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTAGTGGCAGTGGCAAAACCACTATTTACTACCAGgtaacttctaacttttttggtc-tgtgtttttacaagttaaggacaaggttgtagcatctagtttgcaaaataatatctgaacctcatttttttgattcta
    | |||   |   |  | | | | || ||| | || ||  ||||||||||||| ||||||||||| ||| ||| |||||| |||| |  || | |  |||||  ||||  |  |     | || | | |  | |   ||  ||  |   | |||  |  |  |  | |||| | |  |  | 
TTCGCCTGTTCAAGCGCA-CAAAATCCAATACCGTTGTACTTACTGGGCTTAGTGGAAGTGGCAAAACTACTCTTTTCTACCAAgtaagtgttaccctgattggttatgtgactgaaatgtgtcagaaaatgtatttgctatgaagaattttatatatgacatttattttatttatatattaat-