1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GATGACAACAGGTATAACTCTAGCCGAGGTGCCCACCTGAATCTGAAGCGTGCAGAAAAAGCTCGTATCCTTGTTAACAAGATTCCAGgtaccagttcaaattatagcatgaatgccctttacttcatctgcaagaagtttgtgcattgcaaaatttattttacataaaatggacttgtatcttgatatgctagatatgctttatgttccattccattgattgctgatgtaatgtcttcgttcgtcctag
species | Zea mays |
transcript | GRMZM2G465169_T02 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GAATCTGAAGCGTGCAGAAAAAGCTCGTATCCTTGTTAACAAGATTCCAG CACTTGTTGAAACTCTAGTGGCAAAGACCAGGGCATGGGAGGAGAACCGTGEST: gi|32906926|gb|CF011739.1|CF011739
genomic: GAATCTGAAGCGTGCAGAAAAAGCTCGTATCCTTGTTAACAAGATTCCAGgtaccagttc ... ttcgtcctagCACTTGTTGAAACTCTAGTGGCAAAGACCAGGGCATGGGAGGAGAACCGTG
EST: GAATCTGAAGCGTGCAGAAAAAGTTC-TATTCTTGTTAACAAGATTCCAG CACTTGTTGAAACTCTAGTGGCAAAGACCAGGGCATGGGAGGAGAACCGTGEST: gi|60353597|gb|DN220570.1|DN220570
genomic: GAATCTGAAGCGTGCAGAAAAAGCTCGTATCCTTGTTAACAAGATTCCAGgtaccagttc ... ttcgtcctagCACTTGTTGAAACTCTAGTGGCAAAGACCAGGGCATGGGAGGAGAACCGTG
EST: GAATCTGAAGCGTGCAGAAAAAGCTCGTATCCTTGTTAACAAGATTCCAG CACTTGTTGAAACTCTAGTGGCAAAGACCAGGGCATGGGAGGAGAACCGTGEST: gi|33096244|gb|CF056238.1|CF056238
genomic: GAATCTGAAGCGTGCAGAAAAAGCTCGTATCCTTGTTAACAAGATTCCAGgtaccagttc ... ttcgtcctagCACTTGTTGAAACTCTAGTGGCAAAGACCAGGGCATGGGAGGAGAACCGTG
EST: GAATCTGAAGCGTGCAGAAAAAGCTCGTATCCTTGTTAACAAGATTCCAG CACTTGTTGAAACTCTAGTGGCAAAGACCAGGGCATGGGAGGAGAACCGTGEST: gi|32935476|gb|CF040288.1|CF040288
genomic: GAATCTGAAGCGTGCAGAAAAAGCTCGTATCCTTGTTAACAAGATTCCAGgtaccagttc ... ttcgtcctagCACTTGTTGAAACTCTAGTGGCAAAGACCAGGGCATGGGAGGAGAACCGTG
EST: GAATTTGAAGCGTGCAGAAAAAGCTCGTATCCTTGTTAACAAGATTCCAG CACTTGTTGAAACTCTAGTGGCAAAGACCAGGGCATGGGAGGAGAACCGTG
genomic: GAATCTGAAGCGTGCAGAAAAAGCTCGTATCCTTGTTAACAAGATTCCAGgtaccagttc ... ttcgtcctagCACTTGTTGAAACTCTAGTGGCAAAGACCAGGGCATGGGAGGAGAACCGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGACAACAGGTATAACTCTAGCCGAGGTGCCCACCTGAATCTGAAGCGTGCAGAAAAAGCTCGTATCCTTGTTAACAAGATTCCAGgtaccagttcaaattatagcatgaatgccctttacttcatctgcaagaagtttgtgcattgcaaaatttattttacataaaatggacttgtatcttgatatgctagatatgctttatgttccattccattgattgctgatgtaatgtcttcgttcgtcctag
- - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - TGAAGC