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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATACCAAAATTCAGTGTAAGCGGGATATGGCAGAGATGGCGAGAATCATATCCCAACGATGCGAGTAAAAGTACAGAGGCCATTACAGTATTTACTGGAgtatgatttgctgtcatagcataacagtatcttcagattcatgccaaactatttttcttcatattgtttgataagttaaggtaatttgatacttcttttatggcag

Basic information

species Zea mays
transcript GRMZM2G460078_T03
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G460078_T03 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os01g55590.1 (Oryza sativa), 5'ss of exon 8
TATACCAAAATTCAGTGTAAGCGGGATATGGCAGAGATGGCGAGAATCATATCCCAACGATGCGAGTAAAAGTACAGAGGCCATTACAGTATTTACTGGAgtatgatttgctgtcatagcataacagtatcttcagattcatgccaaactatt---tttcttcatattgtttgataagttaaggtaatttgatacttcttttatggcag
 || || ||||| ||||| || || ||||||||||| ||||| || |||||||||||| |||  ||||||| |   || || ||||||||||||||||||||| | ||   || ||||   |    || | || ||||| |||| ||||||||   | || | | |||| | ||    ||| ||| ||| ||||||| |    |  |||
CATGCCGAAATTTAGTGTGAGGGGAATATGGCAGAGGTGGCGTGAGTCATATCCCAACAATGGCAGTAAAAATGATGAAGCAATTACAGTATTTACTGGAgtacggttctatgccatatatttttggt-tttttagatttatgctaaactattacctgtccttaaattgctcgaggcattatggttattcgatacttttggactaccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14529467|gb|BI096600.1|BI096600
EST:     ATCCCAACGATGCGAGTAAAAGTACAGAGGCCATTACAGTATTTACTGGA                         GTTCCAACCATGTATACACGTCTGCTGCAAGGGTATGATAGTATGGATCCT
genomic: ATCCCAACGATGCGAGTAAAAGTACAGAGGCCATTACAGTATTTACTGGAgtatgatttg ... tttatggcagGTTCCAACCATGTATACACGTCTGCTGCAAGGGTATGATAGTATGGATCCT