Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATGTGTTCTCTTTTGGTGTAGTTTTGTTAGAGCTTATTACTGGCCGGAAACCTGTTGATGCATCAAGACCAATGGGTGACGAGAGCCTCGTCGAGTGGgtgagttgttagcgatgagcttatatttgcttcaagcctggtgaagtggtgatgttcctagggcacttcttgttggctgtgatttttgggagttgctatt...

Basic information

species Zea mays
transcript GRMZM2G458548_T01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G458548_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os05g01040.1 (Oryza sativa), 5'ss of exon 6
AGATGTGTTCTCTTTTGGTGTAGTTTTGTTAGAGCTTATTACTGGCCGGAAACCTGTTGATGCATCAAGACCAATGGGTGACGAGAGCCTCGTCGAGTGGgtgagttgttagcgatgagcttatatttgctt---caagcctggtgaagtggtg--atgttcctagggcacttcttgttggctgtgatttttgg-gagttgctatt
 |||||||||||||||||||| ||| | ||||||||||| |||||  | |||||||||||||||||||| ||| ||||||| |||||||| || ||||||||||||| | |||  ||  || | || |  ||    ||    | | |  |||||  || ||  |||  |   |  | |    |||  || | || || ||      
TGATGTGTTCTCTTTTGGTGTTGTTCTCTTAGAGCTTATCACTGGTAGAAAACCTGTTGATGCATCAAGGCCATTGGGTGATGAGAGCCTTGTTGAGTGGgtgagttat-agctctggactgaaatcttattgcttaaaatggtttacttggtggcatatttttagttctgatactctataatgtccttatcggtgaattt-----

upper sequence: GRMZM2G458548_T01 (Zea mays), 5'ss of exon 8
lower sequence: Vv01s0011g02460.t01 (Vitis vinifera), 5'ss of exon 6
AGATGTGTTCTCTTTTGGTGTAGTTTTGTTAGAGCTTATTACTGGCCGGAAACCTGTTGATGCATCAAGACCAATGGGTGACGAGAGCCTCGTCGAGTGGgtgagttgttagcgatgagcttatatttgcttcaagcctggtgaagtggtgatgttcctagggcacttcttgttggctgtgatttttgggagttgctatt------
 ||||| ||||||||||| || ||  |  | |||||||||||||| ||||||||||| ||||||||   |||  ||||||| ||||| || || || ||||| |||| | |  | |||   |     || || |||     |   ||    |  || |||     ||  ||  |   |  || ||    ||  |  || |      
TGATGTCTTCTCTTTTGGAGTTGTCCTTCTGGAGCTTATTACTGGACGGAAACCTGTGGATGCATCTCAACCCGTGGGTGATGAGAGTCTAGTTGAATGGgtaagttat-attgttga---tgaccctgatttaagttctcttttgttacaa-atttctaaaatgctaatttctt-ttcagacttgcatgaactagtagtacatct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88755616|gb|DY539757.1|DY539757
EST:     AACCTGTTGATGCATCAAGACCAATGGGTGACGAGAGCCTCGTCGAGTGG                         GCTCGGCCATTGCTCTCTCGAGCCCTGGACACAGGCGATTTGGAAGGGATG
genomic: AACCTGTTGATGCATCAAGACCAATGGGTGACGAGAGCCTCGTCGAGTGGgtgagttgtt ... ttatttgcagGCTCGGCCATTGCTCTCTCGAGCCCTGGACACAGGCGATTTGGAAGGGTTG