Sequence
atgc intronic sequence ATGC exonic sequenceGATCTGTTGACTGGGTGGCTTTATTGTGATCCTGGTCCAATGTTTAAGCCAGAGCATTACTCATTGGGAGAGTGGGTGCCGCATTGGgtgaggattttttttgctcaatttattcattttgatattatttattgtcctctaagatggcgtcattgcaatgttctcaatcataaaggttcctcaccat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G452529_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os01g55360.2 (Oryza sativa), 5'ss of exon 8
GATCTGTTGACTGGGTGGCTTTATTGTGATCCTGGTCCAATGTTTAAGCCAGAGCATTACTCATTGGGAGAGTGGGTGCCGCATTGGgtgaggat--------tttttttgctcaatttattcattttgatattatttattgtcctctaagatggcgtcattgcaatgttctcaatcataaaggttcctcaccat
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GACCTGTCGACAGGGTGGCTTCGTTGTGACCCTGGTCCTATGTTTAAGCCAGAACATTATTCTTTGGGAGAATGGGTGCCAAAGGGGgtaagaacattgaacattattctgttcaatttatttattttactttcgct-gttataggtt--gtttacgttacccctctaggttaagttcctaaggtaaagc-----
upper sequence: GRMZM2G452529_T02 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA10G32660.2 (Glycine max), 5'ss of exon 8
GATCTGTTGACTGGGTGGCTTTATTGTGATCCTGGTCCAATGTTTAAGCCAGAGCATTACTCATTGGGAGAGTGGGTGCCGCATTGGgtgaggatttt---ttttgctcaatttattcattttgatattatttattgtcctctaagatggcgtcattgcaatgttctcaatcataaaggttcctcaccat
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GATTTGTCAACTGGTTGGCTTCACTGTGATCCTGGTCCACTGTTTAAGCCAGAATCTTATCCCTTACCTGGATGTATTTCTCACTGGgtaagcacttgaaattcagctgaactt--tgaatcttatgttctacatcaatatttact-tgatgccttaaatacaatttagatgccttaaatagcaaaaaaa
upper sequence: GRMZM2G452529_T02 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA20G34940.1 (Glycine max), 5'ss of exon 8
GATCTGTTGACTGGGTGGCTTTATTGTGATCCTGGTCCAATGTTTAAGCCAGAGCATTACTCATTGGGAGAGTGGGTGCCGCATTGGgtgaggatttt---ttttgctcaatttattcattttgatattatttattgtcctctaa--gatggcgtcattgca---atgttctcaatcataaaggttcctcaccat
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GATTTGTCAACTGGTTGGCTTCACTGTGATCCTGGTCCACTGTTTAAGCCGGAATCTTATCCCTTACAAGGATGGATTTCCCACTGGgtaagcacttgaaattccgctgaactt--tgaatcttatgttctacatcaatatttacttgacagagtaagtgtgtgcatggtcaaactagtaaaaaacttc------
upper sequence: GRMZM2G452529_T02 (Zea mays), 5'ss of exon 8
lower sequence: Vv00s0187g00380.t01 (Vitis vinifera), 5'ss of exon 8
GATCTGTTGACTGGGTGGCTTTATTGTGATCCTGGTCCAATGTTTAAGCCAGAGCATTACTCATTGGGAGAGTGGGTGCCGCATTGGgtgag-gattttttttgctcaattt--attcattttgatattatttattgtcc-tctaagatggcgtcattgcaatgttctcaatcataaaggttcctcaccat
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GATTTATCAACTGGTTGGCTTCATTGTGATCCTGGTCCGTTGTTTAAGCCAGAGTATTTCGATTTATCAGGATGGGTTCCTAGATGGgtgagtaagcagttcaatttgatctggaattatatgcaccaaatgttttgctcatccatcatgtctcctttgcaataa-ctgaatcgtccatgcttgactt---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71761916|gb|DR959853.1|DR959853EST: CAATGTTTAAGCCAGAGCATTACTCATTGGGAGAGTGGGTGCCGCATTGG TTCCCATGGAAAGAACTAGCTATTATGCCTGTGCAGTGGCATGCTTTAGCC
genomic: CAATGTTTAAGCCAGAGCATTACTCATTGGGAGAGTGGGTGCCGCATTGGgtgaggattt ... ttcttaacagTTCCCATGGAAAGAACTAGCTATTATGCCTGTGCAGTGGCATGCTTTAGCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATCTGTTGACTGGGTGGCTTTATTGTGATCCTGGTCCAATGTTTAAGCCAGAGCATTACTCATTGGGAGAGTGGGTGCCGCATTGGgtgaggattttttttgctcaatttattcattttgatattatttattgtcctctaagatggcgtcattgcaatgttctcaatcataaaggttcctcaccat
- - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA