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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGTTAGAAGACGCGGTCTCAAAGTTTCTGTTGCTGGCATTCCAAAGACTATTGACAATGACATCCCTgtaatatgtttctccacattttagtgacatttttgtgtaaaaatggaagatgccatttgacatgatcacatgaacaacgaaccccatatgcgtgaattcaccgttacccatgtttcag

Basic information

species Zea mays
transcript GRMZM2G443985_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G443985_T03 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os06g05860.1 (Oryza sativa), 5'ss of exon 8
GAAGTTAGAAGACGCGGTCTCAAAGTTTCTGTTGCTGGCATTCCAAAGACTATTGACAATGACATCCCTgtaatatgtttctccacattttagtgacatttttgtgtaaaa-atggaagatgc----catttgacatgatcacatgaacaacgaaccccatatgcgtgaattcaccgttacccatgtttcag
||  |||||||||| |||||||| ||| |||||||||||||||||||||| ||||| ||||| || || |||||    || | |||||| || |||||||   || | ||  ||||   ||       |||||     | |  |||  ||                                          
GAGATTAGAAGACGTGGTCTCAAGGTTGCTGTTGCTGGCATTCCAAAGACGATTGATAATGATATACCAgtaatgatctttttcacattatattgacattagggtatgaattatggtgtatatgcataatttgtttctaccctatgtgcag-----------------------------------------

upper sequence: GRMZM2G443985_T03 (Zea mays), 5'ss of exon 8
lower sequence: PP1S131_40V6.1 (Physcomitrella patens), 5'ss of exon 8
GAAGTTAGAAGACGCGGTCTCAAAGTTTCTGTTGCTGGCATTCCAAAGACTATTGACAATGACATCCCTgtaata---tgtttctccacat---tttagtgacatttt-tgtg-taaaaat------------ggaagatgccatttgacatgatcacatgaacaacgaaccccatatgcgtgaattcaccgttacccatgtttcag-----------------------------------------------------------
|||   | |||| | ||||| || ||  ||||||| |||||||| || ||||||||||||||||||  ||||      ||| | |  | ||    || ||   |||   || | || || |            ||||| |   |||||  ||       ||  ||| ||   ||| |||     ||| |   |      | ||   |                                                           
GAATGCAAAAGAAGGGGTCTGAAGGTGGCTGTTGCAGGCATTCCCAAAACTATTGACAATGACATCGATgtacgtcactgtcttttgatatacacttggtaggattacgtgcggtagaagtaactaagtttcaggaagctaatatttgg-atacgtgtgtgcgcaaagactaccagatgacatgattaattatgtattgttttcttgaagtccaagtgtgccaccgtctaatgcatatttgtcgaatgtggtatttgaggtaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32938375|gb|CF043194.1|CF043194
EST:     TCAAAGTTTCTGTTGCTGGCATTCCAAAGACTATTGACAATGACGTCCCT                         GTAATTGACAAGTCATTTGGTTTCGACACAGCAGTCGAGGAGGCTCAACGT
genomic: TCAAAGTTTCTGTTGCTGGCATTCCAAAGACTATTGACAATGACATCCCTgtaatatgtt ... catgtttcagGTAATTGACAAGTCATTTGGTTTCGACACAGCAGTCGAGGAGGCTCAACGT
EST: gi|32938968|gb|CF043787.1|CF043787
EST:     TCAAAGTTTCTGTTGCTGGCATTCCAAAGACTATTGACAATGACATCCCT                         GTAATTGACAAGTCATTTGGTTTCGACACAGCAGTCGAGGAGGCTCAACGT
genomic: TCAAAGTTTCTGTTGCTGGCATTCCAAAGACTATTGACAATGACATCCCTgtaatatgtt ... catgtttcagGTAATTGACAAGTCATTTGGTTTCGACACAGCAGTCGAGGAGGCTCAACGT
EST: gi|32939806|gb|CF044625.1|CF044625
EST:     TCAAAGTTTCTGTTGCTGGCATTCCAAAGACTATTGACAATGACATCCCT                         GTAATTGACAAGTCATTTGGTTTCGACACAGCAGTCGAGGAGGCTCAACGT
genomic: TCAAAGTTTCTGTTGCTGGCATTCCAAAGACTATTGACAATGACATCCCTgtaatatgtt ... catgtttcagGTAATTGACAAGTCATTTGGTTTCGACACAGCAGTCGAGGAGGCTCAACGT
EST: gi|32939493|gb|CF044312.1|CF044312
EST:     TCAAAGTTTCTGTTGCTGGCATTCCAAAGACTATTGACAATGACATCCCT                         GTAATTGACAAGTCATTTGGTTTCGACACAGCAGTCGAGGAGGCTCAACGT
genomic: TCAAAGTTTCTGTTGCTGGCATTCCAAAGACTATTGACAATGACATCCCTgtaatatgtt ... catgtttcagGTAATTGACAAGTCATTTGGTTTCGACACAGCAGTCGAGGAGGCTCAACGT
EST: gi|13557855|gb|BG549211.1|BG549211
EST:     TCAAAGTTTCTGTTGCTGGCATTCCAAAGACTATTGACAATGACATCCCT                         GTAATTGACAAGTCATTTGGTTTCGACACAGCAGTCGAGGAGGCTCAACGT
genomic: TCAAAGTTTCTGTTGCTGGCATTCCAAAGACTATTGACAATGACATCCCTgtaatatgtt ... catgtttcagGTAATTGACAAGTCATTTGGTTTCGACACAGCAGTCGAGGAGGCTCAACGT
EST: gi|76921243|gb|DV168509.1|DV168509
EST:     TCAAAGTTTCTGTTGCTGGCATTCCAAAGACTATTGACAATGACATCCCT                         GTAATTGACAAGTCATTTGGTTTCGACACAGCAGTCGAGGAGGCTCAACGT
genomic: TCAAAGTTTCTGTTGCTGGCATTCCAAAGACTATTGACAATGACATCCCTgtaatatgtt ... catgtttcagGTAATTGACAAGTCATTTGGTTTCGACACAGCAGTCGAGGAGGCTCAACGT
EST: gi|211132969|gb|FL170874.1|FL170874
EST:     TCAAAGTTTCTGTTGCTGGCATTCCAAAGACTATTGACAATGACATCCCT                         GTAATTGACAAGTCATTTGGTTTCGACACAGCAGTCGAGGAGGCTCAACGT
genomic: TCAAAGTTTCTGTTGCTGGCATTCCAAAGACTATTGACAATGACATCCCTgtaatatgtt ... catgtttcagGTAATTGACAAGTCATTTGGTTTCGACACAGCAGTCGAGGAGGCTCAACGT