Sequence
atgc intronic sequence ATGC exonic sequenceCACATTGGATGGTCATTCAAAAGGTGTCAATTGTGTTGATTACTTCACTGGTGGTGACCGGCCATATCTAATTACAGGCTCTGATGACCAAACTGCAAAGgtatgacatgttcatttgcacatatgagcattttggacattatgactgattggttaacttgaattag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G443953_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 7
CACATTGGATGGTCATTCAAAAGGTGTCAATTGTGTTGATTACTTCACTGGTGGTGACCGGCCATATCTAATTACAGGCTCTGATGACCAAACTGCAAAGgtatgacatgttcatttgcacatatgagcattttggacattatg---actgattggttaacttgaattag--------------------------------
|| ||||||| |||| ||||| || |||||||||||||| || || ||||||||| ||||||||||| || || |||||||| || ||||| ||||| | | |||||||| | | | | || | | || | || || || |
TACTTTGGATGCTCATCAGAAAGGAGTGAATTGTGTTGATTATTTTACAGGTGGTGACAAACCATATCTAATCACTGGTTCTGATGATCACACTGCTAAGgttt--tgttttcatttgt-tgcttaatctatctgcttgtcgcgcacacgcacacacacacatgtatgaaaaggaataacatggatgaaacttacgaatcag
upper sequence: GRMZM2G443953_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA13G43680.2 (Glycine max), 5'ss of exon 7
CACATTGGATGGTCATTCAAAAGGTGTCAATTGTGTTGATTACTTCACTGGTGGTGACCGGCCATATCTAATTACAGGCTCTGATGACCAAACTGCAAAGgtatgacatgttcatttgcacatatgagcattt---tggacattatgactgattggttaacttgaattag--------------------------------------
|| ||||||| |||| ||||| || |||||||||||||| || || ||||||||| ||||||||||| || || |||||||| || ||||| ||||| | | |||||||| | || | || || | || || | | | ||
TACTTTGGATGCTCATCAGAAAGGAGTGAATTGTGTTGATTATTTTACAGGTGGTGACAAACCATATCTAATCACTGGTTCTGATGATCACACTGCTAAGgttt--tgttttcatttgttgcttgatctatctgcttgtacgcatttacatatacatacatatatatatatatgaaaaggaataacatggatgaaacttatgaatcag
upper sequence: GRMZM2G443953_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA07G03890.1 (Glycine max), 5'ss of exon 7
CACATTGGATGGTCATTCAAAAGGTGTCAATTGTGTTGATTACTTCACTGGTGGTGACCGGCCATATCTAATTACAGGCTCTGATGACCAAACTGCAAAGgtatgacatgttcatttgcacatatgagcattttggacattatgactgattggttaacttgaattag-------------------------------------------
|||||||||| ||| |||||| || ||||||||||||||||| || ||||||||| ||| |||||||| || || |||||||| || ||||| ||||| || | ||| || | | | | || | || || ||| | | | | ||| |
TACATTGGATGCGCATCAAAAAGGAGTGAATTGTGTTGATTACTTTACAGGTGGTGACAAGCCTTATCTAATAACTGGTTCTGATGATCACACTGCCAAGgtttg---ttttctattttctgttttttcctcttc-atcttccctctaatttggtttcctatatttgtatatggataggaattattatgccgataaaacctttgaatcag
upper sequence: GRMZM2G443953_T01 (Zea mays), 5'ss of exon 8
lower sequence: AT1G52360.1 (Arabidopsis thaliana), 5'ss of exon 7
CACATTGGATGGTCATTCAAAAGGTGTCAATTGTGTTGATTACTTCACTGGTGGTGACCGGCCATATCTAATTACAGGCTCTGATGACCAAACTGCAAAGgtatgaca--tgttca--------tttgcacatatgagcattttggacattatgactgattggttaacttg--aattag--------------
|||||||||| ||| ||||| || |||||||| ||||| ||||| |||||||| ||| ||| ||||||| ||||||||||| || ||||| |||||||| | |||||| || | ||| | ||||||||||| | | | | || | ||
TACATTGGATGCCCATCAGAAAGGAGTAAATTGTGTAGATTATTTCACCGGTGGTGATAAGCCCTATTTAATTACCGGCTCTGATGATCACACTGCTAAGgtatgcctcctgttcaatggtcttttagttgatacatttctactggacattatgtgctttcaggttatttactagttgaatttcgtgaatcag
upper sequence: GRMZM2G443953_T01 (Zea mays), 5'ss of exon 8
lower sequence: AT3G15980.3 (Arabidopsis thaliana), 5'ss of exon 7
CACATTGGATGGTCATTCAAAAGGTGTCAATTGTGTTGATTACTTCACTGGTGGTGACCGGCCATATCTAATTACAGGCTCTGATGACCAAACTGCAAAGgtatgacat--gttcatttgcacatatgagcattttggacattatgactgattggttaacttgaattag----------------------
||| |||||| |||| ||||| ||||| ||||| ||||| ||||| || ||||| || ||||||||||| ||||||||||| || ||||| |||||||| ||| | | | |||| | |||| ||| ||| || | | | |
TACACTGGATGCTCATCAGAAAGGAGTCAACTGTGTAGATTATTTCACAGGGGGTGATAAACCCTATCTAATTACCGGCTCTGATGATCATACTGCTAAGgtatgcttctggttaagcttccaatatctgtgctttgattcccctgag-aattatgtatttgcagatcgtttactagtggtactttttcag
upper sequence: GRMZM2G443953_T01 (Zea mays), 5'ss of exon 8
lower sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 7
CACATTGGATGGTCATTCAAAAGGTGTCAATTGTGTTGATTACTTCACTGGTGGTGACCGGCCATATCTAATTACAGGCTCTGATGACCAAACTGCAAAGgt----atgacatgttcatttgc-acata-tgagcattt-tggacattatgactgattggttaacttgaattag--------------
|| ||||||| || ||||| || || ||||||||||||||||||||||||||| |||||| |||| || || |||||||| |||||||| ||||| || ||| | ||| | | ||| ||||| || |||| ||||| || ||| | |
TACTTTGGATGACCACATGAAAGGGGTAAACTGTGTTGATTACTTCACTGGTGGTGACAAGCCATACTTAATCACGGGTTCTGATGATCAAACTGCCAAGgtgtttatctgatgcttattgactaaatagcttccatttatgtgcattccatttgattactttctgtgattaaattttggtggaacag
upper sequence: GRMZM2G443953_T01 (Zea mays), 5'ss of exon 8
lower sequence: PP1S79_180V6.1 (Physcomitrella patens), 5'ss of exon 7
CACATTGGATGGTCATTCAAAAGGTGTCAATTGTGTTGATTACTTCACTGGTGGTGACCGGCCATATCTAATTACAGGCTCTGATGACCAAACTGCAAAGgtatgacatgttcatttgcacatatgagc-attttg--gacattatgactgattggttaacttgaattag-------------------------------
|| | || | |||| |||||||||||||| || || || ||||| || |||||||||||| || | || ||||| |||||||| ||||| || ||||| || ||| | | ||| | | ||||| || | | || |||||| ||| || |
TACCCTCGAGGCTCATCAGAAAGGTGTCAATTGCGTGGAGTATTTCACCGGCGGTGACCGGCCACATTTGATCACAGGATCTGATGATCAAACAGCCAAGgtgtgttg-attcgtgtcttattattatctgttttgctgataccgtaggtgcttggttcccttaaagccgtaagcagattcgtagttcactttactagatt
upper sequence: GRMZM2G443953_T01 (Zea mays), 5'ss of exon 8
lower sequence: PP1S243_63V6.1 (Physcomitrella patens), 5'ss of exon 7
CACATTGGATGGTCATTCAAAAGGTGTCAATTGTGTTGATTACTTCACTGGTGGTGACCGGCCATATCTAATTACAGGCTCTGATGACCAAACTGCAAAGgtatgacat-gttcatttgc-acatatgagcattttggacattatgactgattggttaacttgaattag--------------------------------
|| | || | |||| || |||||||| || || || |||||||||||||||||||| ||| || | || ||||| |||||||| ||||| || ||||| || || ||||| || ||| | || | | | ||| || | |||| || |||
TACCCTCGAGGCTCATCAGAAGGGTGTCAACTGCGTGGAATACTTCACTGGTGGTGACCGACCACATTTGATCACAGGATCTGATGATCAAACAGCTAAGgtgtgtcagagttcacatgttacaattttgcttaataaaaatttagaa-gcctggtctcctgacattgtcccttgaggagtaccgagttcactgttgtaagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71449170|gb|DR830220.1|DR830220EST: GTGGTGACCGGCCATATCTAATTACAGGCTCTGATGACCAAACTGCAAAG GTTTGGGATTATCAAACAAAGAGCTGTGTTCAAACACTTGAAGGACATGCA
genomic: GTGGTGACCGGCCATATCTAATTACAGGCTCTGATGACCAAACTGCAAAGgtatgacatg ... cttgaattagGTTTGGGATTATCAAACAAAGAGCTGTGTTCAAACACTTGAAGGACATGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CACATTGGATGGTCATTCAAAAGGTGTCAATTGTGTTGATTACTTCACTGGTGGTGACCGGCCATATCTAATTACAGGCTCTGATGACCAAACTGCAAAGgtatgacatgttcatttgcacatatgagcattttggacattatgactgattggttaacttgaattag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG