1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGATGATTATGGAGTCATCTGCTAGGTCTGCAGTTTCTTTATTGCCTCGCATCATCCTTTTCCACGGAACAAGTGATTATTCAATACCTCCAGCTGAAAGgtgtgtcacaaagtttacatttatttaacattgtgtattgtagatccattttgtttctgttttacacggttaaggtactgttaggatattaaataaaata...
species | Zea mays |
transcript | GRMZM2G439203_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: ATCATCCTTTTCCACGGAACAAGTGATTATTCAATACCTCCAGCTGAAAG CCAAGCATTTGCTGATGCTTTACAACAGCAAGGCGCAAGGGCAGATCTATTEST: gi|67019905|gb|CO448654.1|CO448654
genomic: ATCATCCTTTTCCACGGAACAAGTGATTATTCAATACCTCCAGCTGAAAGgtgtgtcaca ... aaaaatgcagCCAAGCATTTGCTGATGCTTTACAACAGCAAGGCGCAAGGGCAGATCTATT
EST: CATCCTTTTCCACGGAACAAGTGATTATTCAATANCCTCCAGCTNGAAAG CCAAGCATTTGCTGATGCTTTACAACAGCAAGGCGCAAGGGCAGATCTATEST: gi|78022873|gb|DV491260.1|DV491260
genomic: CATCCTTTTCCACGGAACAAGTGATTATTCAATA-CCTCCAGCT-GAAAGgtgtgtcaca ... aaaaatgcagCCAAGCATTTGCTGATGCTTTACAACAGCAAGGCGCAAGGGCAGATCTAT
EST: ATCATCCTTTTCCACGGAACAAGTGATTATTCAATACCTCCAGCTGAAAG CCAAGCATTTGCTGATGCTTTACAACAGCAAGGCGCAAGGGCAGATCTATTEST: gi|60396475|gb|DN229344.1|DN229344
genomic: ATCATCCTTTTCCACGGAACAAGTGATTATTCAATACCTCCAGCTGAAAGgtgtgtcaca ... aaaaatgcagCCAAGCATTTGCTGATGCTTTACAACAGCAAGGCGCAAGGGCAGATCTATT
EST: ATCATCCTTTTCCACGGAACAAGTGATTATTCAATACCTCCAGCTGAAAG CCAAGCATTTGCTGATGCTTTACAACAGCAAGGCGCAAGGGCAGATCTATTEST: gi|166595586|gb|EG171136.1|EG171136
genomic: ATCATCCTTTTCCACGGAACAAGTGATTATTCAATACCTCCAGCTGAAAGgtgtgtcaca ... aaaaatgcagCCAAGCATTTGCTGATGCTTTACAACAGCAAGGCGCAAGGGCAGATCTATT
EST: CATCCTTTTCCACGGAACAAGTGATTATTCAATACCTCCAGCTGAAAG CCAAGCATTTGCTGATGCTTTACAACAGCAAGGCGCAAGGGCAGATCEST: gi|211099041|gb|FL459781.1|FL459781
genomic: CATCCTTTTCCACGGAACAAGTGATTATTCAATACCTCCAGCTGAAAGgtgtgtcaca ... aaaaatgcagCCAAGCATTTGCTGATGCTTTACAACAGCAAGGCGCAAGGGCAGATC
EST: ATCATCCTTTTCCACGGAACAAGTGATTATTCAATACCTCCAGCTGAAAG CCAAGCATTTGCTGATGCTTTACAACAGCAAGGCGCAAGGGCAGATCTATTEST: gi|211451008|gb|FL447163.1|FL447163
genomic: ATCATCCTTTTCCACGGAACAAGTGATTATTCAATACCTCCAGCTGAAAGgtgtgtcaca ... aaaaatgcagCCAAGCATTTGCTGATGCTTTACAACAGCAAGGCGCAAGGGCAGATCTATT
EST: ATCATCCTTTTCCACGGAACAAGTGATTATTCAATACCTCCAGCTGAAAG CCAAGCATTTGCTGATGCTTTACAACAGCAAGGCGCAAGGGCAGATCTATT
genomic: ATCATCCTTTTCCACGGAACAAGTGATTATTCAATACCTCCAGCTGAAAGgtgtgtcaca ... aaaaatgcagCCAAGCATTTGCTGATGCTTTACAACAGCAAGGCGCAAGGGCAGATCTATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATGATTATGGAGTCATCTGCTAGGTCTGCAGTTTCTTTATTGCCTCGCATCATCCTTTTCCACGGAACAAGTGATTATTCAATACCTCCAGCTGAAAGgtgtgtcacaaagtttacatttatttaacattgtgtattgtagatccattttgtttctgttttacacggttaaggtactgttaggatattaaataaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA