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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCAGTCATATAAGAAGATAATTGGTTTTGTGCCTCAAGATGATATTGTCCATGGGAACCTGACCGTCGAGGAAAATCTGTGGTTTAGTTCATGTTGCAGgtatttgatagaaaatacaaagtttaattgctttccgagtctattccttttctgttccactattctgttttagtacaacatttatcgaataacttattac...

Basic information

species Zea mays
transcript GRMZM2G430675_T03
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G430675_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os10g30610.2 (Oryza sativa), 5'ss of exon 7
TGCAGTCATATAAGAAGATAATTGGTTTTGTGCCTCAAGATGATATTGTCCATGGGAACCTGACCGTCGAGGAAAATCTGTGGTTTAGTTCATGTTGCAGgtatttgatagaaa------atacaaagtttaattgctttccgagtctattccttttctgttccactattctgttttagtacaacatttatcgaataacttattac
||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||| |||| || ||||||||  ||||||||||| | || ||||||||||  ||| |         | || || ||  || |||||    |  |||  |||||  ||||| ||       |||   ||| | ||||   ||| |       
TGCAGTCATATAAGAAGATCATTGGTTTTGTGCCACAAGATGACATTGTCCATGGGAACTTGACGGTTGAGGAAAACTTGTGGTTTAGTGCGTGCTGCAGgtattaaatacaggcatatggtgcatagcttggttactttcattattgattatttttcc-ttccattaaatatgcttatatcaaaacttatgacatagcac-----

upper sequence: GRMZM2G430675_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA02G21570.1 (Glycine max), 5'ss of exon 7
TGCAGTCATATAAGAAGATAATTGGTTTTGTGCCTCAAGATGATATTGTCCATGGGAACCTGACCGTCGAGGAAAATCTGTGGTTTAGTTCATGTTGCAGgtatttgatagaaaatacaaagtttaattgctttccgagtctattccttttctgttccactattctgt-tttagtacaacatttatcgaataa--cttattac--
| || || |||||||| || ||||| |||||||| ||||||||||| || ||||| |||||||| || || |||||| |  |||| ||| ||   ||||||||  | | |     |  ||| |  |  ||||    |  | |  || |||| | || ||   || ||  ||||  |      |  | || | |  |||| ||   
TCCACTCCTATAAGAAAATTATTGGCTTTGTGCCACAAGATGATATAGTTCATGGAAACCTGACGGTGGAAGAAAATTTCCGGTTCAGTGCACTGTGCAGgtaaatcacatggtttg-aaattccagatgct----gtatattctctttttttttttcaagtttatgcatttaacattggcgtcctagatttatacttaatagat

upper sequence: GRMZM2G430675_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA13G20750.1 (Glycine max), 5'ss of exon 7
TGCAGTCATATAAGAAGATAATTGGTTTTGTGCCTCAAGATGATATTGTCCATGGGAACCTGACCGTCGAGGAAAATCTGTGGTTTAGTTCATGTTGCAGgtatttgatagaaaatacaaagtttaattgctttccgagtctattccttttctgttccactattctgttttagtacaacatttatcgaataacttattac----
| || |  ||| |||| || ||||||| |||||| |||||||||||||| ||||||||| |||| || |||||||||||  | || ||  || | ||||||||| ||||      |  | |  ||| ||  |  |    | | || |  |    ||  | | |      || ||     |||       ||| | ||| |    
TTCATTGTTATCAGAAAATTATTGGTTATGTGCCACAAGATGATATTGTGCATGGGAACTTGACAGTGGAGGAAAATCTTCGTTTCAGCGCAAGATGCAGgtatctgatttgccttcgagaacttactttgtgcctc--tttttttccatatgcttgaaatgtgtgaactttgtttgttattacctc--taattcattgcaatt

upper sequence: GRMZM2G430675_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA11G20220.1 (Glycine max), 5'ss of exon 6
TGCAGTCATATAAGAAGATAATTGGTTTTGTGCCTCAAGATGATATTGTCCATGGGAACCTGACCGTCGAGGAAAATCTGTGGTTTAGTTCATGTTGCAGgtatttgatagaaaatacaaagtttaattgctttccgagtctattccttttctgttccactattctgttttagtacaacatttatcgaataacttattac-----------------------------------------------------------------------------------------------------
|    ||||| ||||| || || ||||||||||| |||||||||||||| ||||| ||  |||| || ||||||||||| ||||||||| |  | |||||||||   |||    |  ||   ||| |||   || |  | || ||  | ||     | | || | |||||||  |   | |   |    ||  |   |||                                                                                                     
TCAGATCATACAAGAAAATCATAGGTTTTGTGCCACAAGATGATATTGTGCATGGCAATTTGACAGTGGAGGAAAATCTATGGTTTAGTGCTAGATGCAGgtatactatatgttaagca---ttttattctgttacacgactttttatgtttaa--caagtactatgttttaacatc-cttaggttagctatttagctacttttattcacaagtcttgtaaataaaaaggtttgtgagtttattgaatacattttcttactatcaattttctctcttcactatatttgtttgtcattgtag

upper sequence: GRMZM2G430675_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA12G08290.1 (Glycine max), 5'ss of exon 5
TGCAGTCATATAAGAAGATAATTGGTTTTGTGCCTCAAGATGATATTGTCCATGGGAACCTGACCGTCGAGGAAAATCTGTGGTTTAGTTCATGTTGCAGgtatttgatagaaaatacaaagtttaattgctttc-cgagtcta---ttccttttctgttccactattctgttttagtacaacatttatcgaataacttattac
|   |||||| ||||| || ||||| |||||||| |||||||||||||| ||||| ||  |||| || ||||||||||| ||||||||| |  | |||||||||   |||    |  ||   |||| |  ||| | ||| | ||   || |  ||  | |   | |       ||       || ||     | |||  | |  
TCAGGTCATACAAGAAAATCATTGGGTTTGTGCCACAAGATGATATTGTGCATGGCAATTTGACAGTGGAGGAAAATCTATGGTTTAGTGCTAGATGCAGgtatactatatgttaagca--ttttattctcttacacgactttagaattgcggttgcggtgagccagataacctttagcgggcaattgcgagaaaacgcagt--

upper sequence: GRMZM2G430675_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA10G06550.1 (Glycine max), 5'ss of exon 7
TGCAGTCATATAAGAAGATAATTGGTTTTGTGCCTCAAGATGATATTGTCCATGGGAACCTGACCGTCGAGGAAAATCTGTGGTTTAGTTCATGTTGCAGgtatttgatagaaaatacaaagtttaattgctttccgagtctattccttttctgttccactattctgttttagtacaacat-ttatcgaat--aacttattac
| || |  ||| |||| || ||||||| |||||| |||||||||||||| ||||| ||| |||| || |||||||||||  | || ||| || | ||||||||| | ||   |  | |   |   || |    || | | || |   ||||   |     |    ||| | |        | ||||    |  |  | |||  
TTCATTGTTATCAGAAAATTATTGGTTATGTGCCACAAGATGATATTGTGCATGGAAACTTGACAGTGGAGGAAAATCTTCGTTTCAGTGCAAGATGCAGgtatct-atgtgatttgcctcggagaact-tactctgtgcctgtctttttttcatatgcttgaaatgtgtgaactttgtttgttattacctctagttcattg-

upper sequence: GRMZM2G430675_T01 (Zea mays), 5'ss of exon 8
lower sequence: AT2G37010.1 (Arabidopsis thaliana), 5'ss of exon 8
TGCAGTCATATAAGAAGATAATTGGTTTTGTGCCTCAAGATGATATTGTCCATGGGAACCTGACCGTCGAGGAAAATCTGTGGTTTAGTTCATGTTGCAGgta-------tttgatagaaaatacaaagtttaattgct--ttccgagtctattccttttctgttccactat-tctgttttagtacaacatttatcgaataacttattac---------------------
|  | || ||||||||||| | ||| |||||||| ||||||||| |||| ||||| || || |||||||| || || ||  | |||||  || | ||||||||       | | |||  | | |  |  || |    |   |||  |    | | | ||| | || ||   | | | |  |   | || || |  |  || | |||||                       
TAAACTCGTATAAGAAGATCACTGGATTTGTGCCACAAGATGATGTTGTGCATGGCAATCTTACCGTCGAAGAGAACCTTCGATTTAGCGCAAGATGCAGgtaaatttattctcatatcatagaggagattgagagtccaattcttaaaaaaatacatttttattacatagtgtttatgcttcaaaaaaatgttgcatatcatttatttatatatgtttctttacatgcag

upper sequence: GRMZM2G430675_T01 (Zea mays), 5'ss of exon 8
lower sequence: AT5G60740.1 (Arabidopsis thaliana), 5'ss of exon 8
TGCAGTCATATAAGAAGATAATTGGTTTTGTGCCTCAAGATGATATTGTCCATGGGAACCTGACCGTCGAGGAAAATCTGTGGTTTAGTTCATGTTGCAGgtatttgatagaaaatacaaagtttaattgctttccgagtctattccttttctgttccactattctgttttagtacaacatttatcgaataacttattac
| || || || |||||||| || |||||||| ||||||||||| || |||||||| ||| | || || ||||||||||| ||||| ||  || | |||||||          |  |||     ||  ||||||   ||   | ||  |   ||||     || |||  ||    ||  |||  |                
TTCAATCCTACAAGAAGATTATAGGTTTTGTACCTCAAGATGACATAGTCCATGGAAACTTAACAGTGGAGGAAAATCTTTGGTTCAGCGCAAGATGCAGgtt---------agctac-----ttttttgcttaatgaaaatcttattcaactgtatgcataatctcattggtcactgcatacag---------------

upper sequence: GRMZM2G430675_T01 (Zea mays), 5'ss of exon 8
lower sequence: Vv08s0040g01620.t01 (Vitis vinifera), 5'ss of exon 9
TGCAGTCATATAAGAAGATAATTGGTTTTGTGCCTCAAGATGATATTGTCCATGGGAACCTGACCGTCGAGGAAAATCTGTGGTTTAGTTCATGTTGCAGgtatttga-----tagaaaatacaaagtttaattgctttccgagtctattccttttctgttccactattctgttttagtacaacatttatcgaataacttattac
| || ||||||||||| || ||||||||||| || ||||||||||| || ||||||||  |||| || ||||| |||||  |||| ||| || | ||||||||| |||     |      ||   |   ||| ||| ||   || |||||    || |     | | || | | ||  | ||  | |  |   ||     || | 
TCCACTCATATAAGAAAATTATTGGTTTTGTACCACAAGATGATATAGTGCATGGGAATTTGACAGTAGAGGAGAATCTCCGGTTCAGTGCACGGTGCAGgtatgtgactttttgtcctttatgcatgctaaatgcattttaag-ctattaacgttat---taaatgttttatattcatccataactcttatgattcaagatca-

upper sequence: GRMZM2G430675_T01 (Zea mays), 5'ss of exon 8
lower sequence: Vv06s0004g02490.t01 (Vitis vinifera), 5'ss of exon 8
TGCAGTCATATAAGAAGATAATTGGTTTTGTGCCTCAAGATGATATTGTCCATGGGAACCTGACCGTCGAGGAAAATCTGTGGTTTAGTTCATGTTGCAGgtatttgatagaaaatacaa--agtttaattgctttccgagtctattccttttctgttccactattctgttttagtacaacatttatcgaataacttattac
|||| || || ||||| || |||||||||||||| |||||||||||||| ||||| ||| |||| ||  |||| ||||| ||||| ||| || | ||||||||| | | |   ||| | |   | |  |     ||   || ||  |  | ||   |   | ||     ||     | || | | | | || || |||||| 
TGCACTCGTACAAGAAAATTATTGGTTTTGTGCCACAAGATGATATTGTGCATGGAAACTTGACAGTTCAGGAGAATCTATGGTTCAGTGCAAGGTGCAGgtatgtcacatttaattccattgggtagaccaacttt--agactgattatcttacttcaaattacatcattcccaaaaaataatgacctaagaatttattaa

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33095094|gb|CF055088.1|CF055088
EST:     CATGGGAACCTGACCGTCGAGGAAAATCTGTGGTTTAGTTCATGTTGCAG                         GTTAAGCAAAGGCATGTCAAGATCTCATAAGGTTAGAATTCTTGAACGGGT
genomic: CATGGGAACCTGACCGTCGAGGAAAATCTGTGGTTTAGTTCATGTTGCAGgtatttgata ... tgtggactagGTTAAGCAAAGGCATGTCAAGATCTCATAAGGTTAGAATTCTTGAACGGGT