1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TCAGCGACTACGACCAGCTCGGAGCCCCAGCGAGCGGCAGTAGCAGGACACTCGTGAATAAGATGATCCAAAGCAGGGACCTGTTTGAGGCTACAATCAGgtgcaggagcctctccattactgtccatgtcattcatatgtgtatatattgcagaaacacaattccaatggacttaaagttactgaatcatatatttttcaagttacag
species | Zea mays |
transcript | GRMZM2G429113_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CTCGTGAATAAGATGATCCAAAGCAGGGACCTGTTTGAGGCTACAATCAG GCAGCCGTGCTTCCGTGACACGCCGTTCCTGCTTTTGCTGAACAAGTACGAEST: gi|4887465|gb|AI677564.1|AI677564
genomic: CTCGTGAATAAGATGATCCAAAGCAGGGACCTGTTTGAGGCTACAATCAGgtgcaggagc ... caagttacagGCAGCCGTGCTTCCGTGACACGCCGTTCCTGCTTTTGCTGAACAAGTACGA
EST: GAGGCTACAATCAG GCAGCCGTGCTTCCGTGACACGCCGTTCCTGCTTTTGCTGAACAAGTACGAEST: gi|89754933|gb|DY685545.1|DY685545
genomic: GAGGCTACAATCAGgtgcaggagc ... caagttacagGCAGCCGTGCTTCCGTGACACGCCGTTCCTGCTTTTGCTGAACAAGTACGA
EST: CTCGTGAATAAGATGATCCAAAGCAGGGACCTGTTTGAGGCTACAATCAG GCAGCCGTGCTTCCGTGACACGCCGTTCCTGCTTTTGCTGAACAAGTACGAEST: gi|110193176|gb|EC875074.1|EC875074
genomic: CTCGTGAATAAGATGATCCAAAGCAGGGACCTGTTTGAGGCTACAATCAGgtgcaggagc ... caagttacagGCAGCCGTGCTTCCGTGACACGCCGTTCCTGCTTTTGCTGAACAAGTACGA
EST: CTCGTGAATAAGATGATCCAAAGCAGGGACCTGTTTGAGGTTACAATCAG GCAGCCGTGCTTCCGTGACACGCCGTTCCTGCTTTTGCTGAACAAGTACGAEST: gi|78026788|gb|DV495175.1|DV495175
genomic: CTCGTGAATAAGATGATCCAAAGCAGGGACCTGTTTGAGGCTACAATCAGgtgcaggagc ... caagttacagGCAGCCGTGCTTCCGTGACACGCCGTTCCTGCTTTTGCTGAACAAGTACGA
EST: GAGGCTACAATCAG GCAGCCGTGCTTCCGTGACACGCCGTTCCTGCTTTTGCTGAACAAGTACGAEST: gi|89754935|gb|DY685546.1|DY685546
genomic: GAGGCTACAATCAGgtgcaggagc ... caagttacagGCAGCCGTGCTTCCGTGACACGCCGTTCCTGCTTTTGCTGAACAAGTACGA
EST: CTCGTGAATAAGATGATCCAAAGCAGGGACCTGTTTGAGGCTACAATCAG GCAGCCGTGCTTCCGTGACACGCCGTTCCTGCTTTTGCTGAACAAGTACGA
genomic: CTCGTGAATAAGATGATCCAAAGCAGGGACCTGTTTGAGGCTACAATCAGgtgcaggagc ... caagttacagGCAGCCGTGCTTCCGTGACACGCCGTTCCTGCTTTTGCTGAACAAGTACGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAGCGACTACGACCAGCTCGGAGCCCCAGCGAGCGGCAGTAGCAGGACACTCGTGAATAAGATGATCCAAAGCAGGGACCTGTTTGAGGCTACAATCAGgtgcaggagcctctccattactgtccatgtcattcatatgtgtatatattgcagaaacacaattccaatggacttaaagttactgaatcatatatttttcaagttacag
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