1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CCAAATAAGTTTCAGCACCGTCCGGGACAAAATCAGGGCTAGAGTTGGCTGGATGCCCGAGATGTTCATGGACTGCGAGAGGCGCAACTTTGTCGTTCAGgtattgccgctgacccacaacccattatgccattcggtcctcccccaccttttttggttgcacggttgcctgacagcgggcacaaataaactagcaaccaaagcggccctttattttattctgggtgtgctcctaccggccgcacatgttaagctcacaagcacatcgctgctgttgacgttgcaccag
species | Zea mays |
transcript | GRMZM2G421791_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GGATGCCCGAGATGTTCATGGACTGCGAGAGGCGCAACTTTGTCGTTCAG GCGTACCACAGAGAGCTACTGGAGCAGATGAEST: gi|13149974|gb|BG320296.1|BG320296
genomic: GGATGCCCGAGATGTTCATGGACTGCGAGAGGCGCAACTTTGTCGTTCAGgtattgccgc ... gttgcaccagGCGTACCACAGAGAGCTACTGGAGCAGATGA
EST: GGATGCCCGAGATGTTCATGGACTGCGAGAGGCGCAACTTTGTCGTTCAG GCGTACCACAGAGAGCTACTGGAGCAGATGATTGCATCAGGTASNGNATYCEST: gi|149096257|gb|EE181965.2|EE181965
genomic: GGATGCCCGAGATGTTCATGGACTGCGAGAGGCGCAACTTTGTCGTTCAGgtattgccgc ... gttgcaccagGCGTACCACAGAGAGCTACTGGAGCAGATGATTGCATCAGGTAG-G-ATGC
EST: GGATGCCCGAGATGTTCATGGACTGCGAGAGGCGCAACTTTGTCGTTCAG GCGTACCACAGAGAGCTACTGGAGCAGATGATTGCATCAGGTAGGATGCCCEST: gi|31357415|gb|CD441772.1|CD441772
genomic: GGATGCCCGAGATGTTCATGGACTGCGAGAGGCGCAACTTTGTCGTTCAGgtattgccgc ... gttgcaccagGCGTACCACAGAGAGCTACTGGAGCAGATGATTGCATCAGGTAGGATGCCC
EST: GGATGCCCGAGATGTTCATGGACTGCGAGAGGCGCAACTTTGTCGTTCAG GCGTACCACAGAGAGCTACTGGAGCAGATGATTGCATCAGGTAGGATGCCCEST: gi|21759893|gb|BQ635434.1|BQ635434
genomic: GGATGCCCGAGATGTTCATGGACTGCGAGAGGCGCAACTTTGTCGTTCAGgtattgccgc ... gttgcaccagGCGTACCACAGAGAGCTACTGGAGCAGATGATTGCATCAGGTAGGATGCCC
EST: GGATGCCCGAGATGTTCATGGACTGCGAGAGGCGCAACTTTGTCGTTCAG GCGTACCACAGAGAGCTACTGGAGCAGATGATTGCATCAGGTAGGATGCCCEST: gi|45568659|gb|CK986172.1|CK986172
genomic: GGATGCCCGAGATGTTCATGGACTGCGAGAGGCGCAACTTTGTCGTTCAGgtattgccgc ... gttgcaccagGCGTACCACAGAGAGCTACTGGAGCAGATGATTGCATCAGGTAGGATGCCC
EST: GGATGCCCGAGATGTTCATGGACTGCGAGAGGCGCAACTTTGTCGTTCAG GCGTACCACAGAGAGCTACTGGAGCAGATGATTGCATCAGGTAGGATGCCCEST: gi|16921217|gb|BM075042.1|BM075042
genomic: GGATGCCCGAGATGTTCATGGACTGCGAGAGGCGCAACTTTGTCGTTCAGgtattgccgc ... gttgcaccagGCGTACCACAGAGAGCTACTGGAGCAGATGATTGCATCAGGTAGGATGCCC
EST: GGATGCCCGAGATGTTCATGGACTGCGAGAGGCGCAACTTTGTCGTTCAG GCGTACCACAGAGAGCTACTGGAGCAGATGATTGCATCAGGTAGGATGCCCEST: gi|149087532|gb|EE176930.2|EE176930
genomic: GGATGCCCGAGATGTTCATGGACTGCGAGAGGCGCAACTTTGTCGTTCAGgtattgccgc ... gttgcaccagGCGTACCACAGAGAGCTACTGGAGCAGATGATTGCATCAGGTAGGATGCCC
EST: GGATGCCCGAGATGTTCATGGACTGCGAGAGGCGCAACTTTGTCGTTCAG GCGTACCACAGAGAGCTACTGGAGCAGATGATTGCATCAGGTAGGATGCCCEST: gi|149097874|gb|EE183808.2|EE183808
genomic: GGATGCCCGAGATGTTCATGGACTGCGAGAGGCGCAACTTTGTCGTTCAGgtattgccgc ... gttgcaccagGCGTACCACAGAGAGCTACTGGAGCAGATGATTGCATCAGGTAGGATGCCC
EST: GGATGCCCGAGATGTTCATGGACTGCGAGAGGCGCAACTTTGTCGTTCAG GCGTACCACAGAGAGCTACTGGAGCAGATGATTGCATCAGGTAGGATGCCCEST: gi|211343960|gb|FL066590.1|FL066590
genomic: GGATGCCCGAGATGTTCATGGACTGCGAGAGGCGCAACTTTGTCGTTCAGgtattgccgc ... gttgcaccagGCGTACCACAGAGAGCTACTGGAGCAGATGATTGCATCAGGTAGGATGCCC
EST: GGATGCCCGAGATGTTCATGGACTGCGAGAGGCGCAACTTTGTCGTTCAG GCGTACCACAGAGAGCTACTGGAGCAGATGATTGCATCAGGTAGGATGCCCEST: gi|111991041|gb|EE331929.1|EE331929
genomic: GGATGCCCGAGATGTTCATGGACTGCGAGAGGCGCAACTTTGTCGTTCAGgtattgccgc ... gttgcaccagGCGTACCACAGAGAGCTACTGGAGCAGATGATTGCATCAGGTAGGATGCCC
EST: GGATGCCCGAGATGTTCATGGACTGCGAGAGGCGCAACTTTGTCGTTCAG GCGTACCACTTTATAGCTACTGGAGCAGATGATTGCATCAGGTAGGATGCC
genomic: GGATGCCCGAGATGTTCATGGACTGCGAGAGGCGCAACTTTGTCGTTCAGgtattgccgc ... gttgcaccagGCGTACCACAG-AGAGCTACTGGAGCAGATGATTGCATCAGGTAGGATGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAAATAAGTTTCAGCACCGTCCGGGACAAAATCAGGGCTAGAGTTGGCTGGATGCCCGAGATGTTCATGGACTGCGAGAGGCGCAACTTTGTCGTTCAGgtattgccgctgacccacaacccattatgccattcggtcctcccccaccttttttggttgcacggttgcctgacagcgggcacaaataaactagcaaccaaagcggccctttattttattctgggtgtgctcctaccggccgcacatgttaagctcacaagcacatcgctgctgttgacgttgcaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG