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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCAGTTTTGTAATTGATGAACGCCTACGTGGTAAAGGATACAAGCGCAAGgtgaccccttttcctctttctcatatcaaagcatcaccggacatattctactatcagtttatatctgttctttcgggctgctttggtgatcagggatcca...

Basic information

species Zea mays
transcript GRMZM2G421655_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G421655_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os07g30980.1 (Oryza sativa), 5'ss of exon 27
ATCAGTTTTGTAATTGATGAACGCCTACGTGGTAAAGGATACAAGCGCAAGgt--gaccccttttcctctttctcatatcaaagcatcaccggacatattctactatcagtttatatctgttctttcgggctgctttg-gtgatcagggatcca
||  ||||||| |||||||||||  |||| |||||||||||||||||||||||  |   | || | |  ||  |   |  |   |     | | || ||  |    |   |   | | | || | | |   | ||||   | |||  |      
ATTGGTTTTGTTATTGATGAACGTTTACGAGGTAAAGGATACAAGCGCAAGgttggttgctttgttccattgattccactatctccctttctgtcacatcttttatttcatgattgtttattatattgatgttctttatatcatcttgttc---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211145564|gb|FL475598.1|FL475598
EST:     TCAGTTTTGTAATTGATGAACGCCTACGTGGTAAAGGATACAAGCGCAAG                         GATGTCTTGCGAAAGCTGAAATCGTTCCTAAGCGGTGATGAAGCATTGGGC
genomic: TCAGTTTTGTAATTGATGAACGCCTACGTGGTAAAGGATACAAGCGCAAGgtgacccctt ... tcttatctagGATGTCTTGCGAAAGCTGAAATCGTTCCTAAGCGGTGATGAAGCATTGGGC
EST: gi|67025795|gb|CO454544.1|CO454544
EST:     TCAGTTTTGTAATTGATGAACGCCTACGTGGTAAAGGATACAAGCGCAAG                         GATGTCTTGCGAAAGCTGAAATCGTTCCTAAGCGGTGATGAAGCATTGGGC
genomic: TCAGTTTTGTAATTGATGAACGCCTACGTGGTAAAGGATACAAGCGCAAGgtgacccctt ... tcttatctagGATGTCTTGCGAAAGCTGAAATCGTTCCTAAGCGGTGATGAAGCATTGGGC