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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGATGGTCTAGACTTGCTGATTTGAATGTCCACGAGGGAAAACTTCTTGGTTGTTCTTTCAATCAAAGTTGTGTTGGAATATGGGTTGTTGATCTGACGgtatgttgacttcagctacatttgtaacactgatctgttttccttcttgccttttaatctaataagtaataacaaagtaatcaattggcag

Basic information

species Zea mays
transcript GRMZM2G406553_T05
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G406553_T04 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os04g58130.1 (Oryza sativa), 5'ss of exon 8
GGGATGGTCTAGACTTGCTGATTTGAATGTCCACGAGGGAAAACTTCTTGGTTGTTCTTTCAATCAAAGTTGTGTTGGAATATGGGTTGTTGATCTGACGgtatgt---tgacttc--agctacatttgtaacactgatctgttttccttcttg-------ccttttaatctaataagtaata-ac--aaagtaatcaattggcag
|||||||||||||||  ||||| | |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||| |||||||||   || ||||   |||||| || ||||||  || | || |  |  |||       || |||  | | |    ||||  ||  |||   |||||||  |||
GGGATGGTCTAGACTGTCTGATCTAAATGTCCACGAGGGAAAACTTCTTGGTTGTTCATTTAATCAAAGTTGTGTTGGAATATGGGTTGTAGATCTAACGgtatgtttctggcttccctgctacagttctaacaccaatatattattttcattgaagttccccatttgtttttagttataatgtactaaaaaccatcaattttcag

upper sequence: GRMZM2G406553_T04 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA19G00890.1 (Glycine max), 5'ss of exon 9
GGGATGGTCTAGACTTGCTGATTTGAATGTCCACGAGGGAAAACTTCTTGGTTGTTCTTTCAATCAAAGTTGTGTTGGAATATGGGTTGTTGATCTGACGgtatgttgacttc------agctacatttgtaacactgatc----tgttttccttcttgccttttaat-ctaataagtaataacaaagt---aatcaattggcag-
||| ||||||||| |  | ||| | ||| | || || |||||||||||||| || || | ||||||||| ||||||||| | |||||||| ||  |  |||||  |  ||||       ||  | |||| |    || ||     |||| |  ||  | || |||||| |||||  |   |   | | |    | |  ||| |   
GGGTTGGTCTAGATTGTCAGATCTTAATTTTCATGAAGGAAAACTTCTTGGCTGCTCATACAATCAAAGCTGTGTTGGAGTCTGGGTTGTGGACATCTCGgtaaatgcacttatcttaaagagaaatttctgcggcttataggaatgttgtatttgataccatttaatactaatgtgcctttttacatttctgacctcttgtccag

upper sequence: GRMZM2G406553_T04 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA05G09360.1 (Glycine max), 5'ss of exon 9
GGGATGGTCTAGACTTGCTGATTTGAATGTCCACGAGGGAAAACTTCTTGGTTGTTCTTTCAATCAAAGTTGTGTTGGAATATGGGTTGTTGATCTGACGgtatgttgacttcagctacatttgtaacactgatctgttttccttcttgccttttaatctaataagtaataacaaagtaatcaattggcag------------------
||| ||||||||| |  | ||| | ||||| || || ||||||||||||||||| || | ||||||||| ||||||||| | |||||||| ||  |  |||||  |  |||| | || ||   | ||   |  |||| ||   |   ||   | |    ||  |  |||||  || ||      ||  ||                   
GGGTTGGTCTAGATTGTCAGATCTTAATGTTCATGAAGGAAAACTTCTTGGTTGCTCATACAATCAAAGCTGTGTTGGAGTCTGGGTTGTGGACATCTCGgtaaatgcactt-atcttcaagag-aatttttttctgcttatatgaatgttgtatttgataccatttaatactaatgtgtcttttttacatttctgacctcttgtccag

upper sequence: GRMZM2G406553_T04 (Zea mays), 5'ss of exon 8
lower sequence: AT5G23430.2 (Arabidopsis thaliana), 5'ss of exon 9
GGGATGGTCTAGACTTGCTGATTTGAATGTCCACGAGGGAAAACTTCTTGGTTGTTCTTTCAATCAAAGTTGTGTTGGAATATGGGTTGTTGATCTGACGgtatgttgacttcagctacatttgtaacactgatctgttttccttcttgccttt--taatctaataagtaataacaaagt----aatcaattggcag
 |||||||| ||| |  | ||| ||||||| ||||||||||| ||||||||||| || | |||||| |||||||| ||  | |||||||| |||||  |||||| |   ||    |||||| | |    ||  | |  |||  || | ||   |  ||||||  || | |  |||  | |    |||  || | |||
TGGATGGTCAAGATTGTCAGATATGAATGTTCACGAGGGAAAGCTTCTTGGTTGCTCATACAATCAGAGTTGTGTAGGCGTGTGGGTTGTAGATCTCTCGgtat-tcctctctccctacatatctttttct--ttttgtttaattgtagctggtagtaatctt-tacgaaccaactcattttcaaatgcatggtcag

upper sequence: GRMZM2G406553_T04 (Zea mays), 5'ss of exon 8
lower sequence: EFJ05569 (Selaginella moellendorffii), 5'ss of exon 9
GGGATGGTCTAGACTTGCTGATTTGAATGTCCACGAGGGAAAACTTCTTGGTTGTTCTTTCAATCAAAGTTGTGTTGGAATATGGGTTGTTGATCTGACGgta--tgttgacttcagctacatttgtaacactgatctgttttccttcttgccttttaatctaataagtaataacaaagtaatcaattggcag
    |||||  || | |||||||||||||| || || || ||| | ||||| || |||||||| ||||||||||| ||| ||||||| || ||  |  | |||   ||    | || |||   ||||     | || | | ||                                                  
CAACTGGTCACGATTGGCTGATTTGAATGTGCATGAAGGGAAATTACTTGGATGCTCTTTCAACCAAAGTTGTGTGGGAGTATGGGTCGTGGACTTACCTgtaagcgtcttttgcatctattattgtgtatataatatatgtttgcag---------------------------------------------

upper sequence: GRMZM2G406553_T04 (Zea mays), 5'ss of exon 8
lower sequence: EFJ23110 (Selaginella moellendorffii), 5'ss of exon 8
GGGATGGTCTAGACTTGCTGATTTGAATGTCCACGAGGGAAAACTTCTTGGTTGTTCTTTCAATCAAAGTTGTGTTGGAATATGGGTTGTTGATCTGACGgtatgttgacttcagctacatttgtaacactgatctgttttccttcttgccttttaatctaataagtaataacaaagtaatcaattggcag
 || ||||| | | | || ||  | | | | ||||| ||||| |||||||| |||||||| || || |||||||| ||  | |||||||||||||| |||||| |             ||  ||| | |    | ||||   ||| || |                                         
TGGCTGGTCAAAAATCGCCGACCTCAGTATTCACGAAGGAAAGCTTCTTGGCTGTTCTTTTAACCAGAGTTGTGTCGGCGTGTGGGTTGTTGATCTTACGgtaagaatttgctgttgtcaagtgtcaaataattgtgttcgtctttttactgcag------------------------------------