Sequence
atgc intronic sequence ATGC exonic sequenceGGAGTGGCTGCTGGTGCAGCCTTGCTATTTGCTATTCCTGCAATTAGTTTTGCCTATTGGCGGCGCAGGAAACCACAAGAACATTTCTTTGATGTACCTGgtaagtattcaacaggagaataacttagggaacaacattgaatttgaattaacttaatgtgagacttcgaatgtggcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G384439_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os08g07760.1 (Oryza sativa), 5'ss of exon 8
GGAGTGGCTGCTGGTGCAGCCTTGCTATTTGCTATTCCTGCAATTAGTTTTGCCTATTGGCGGCGCAGGAAACCACAAGAACATTTCTTTGATGTACCTGgtaagtattcaacaggagaat--aacttagggaacaacattgaatttgaattaacttaatgtgagacttcgaatgtggcag
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GGAGTGGCTGCTGGAGCAGCCTTGCTATTTGCTATTCCTGCTATTGGTTTTGCATGGTATCGGCGCAGGAAACCCCAAGAGCATTTCTTTGATGTGCCTGgtaagcgtccaatagaacaagcgaacttggagaataatattgagccaactttgattga----gattcattatttgttacag
upper sequence: GRMZM2G384439_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA10G36280.1 (Glycine max), 5'ss of exon 8
GGAGTGGCTGCTGGTGCAGCCTTGCTATTTGCTATTCCTGCAATTAGTTTTGCCTATTGGCGGCGCAGGAAACCACAAGAACATTTCTTTGATGTACCTGgtaagtattcaacaggagaataacttagggaacaac---attgaatttgaattaacttaatgtgaga-cttcgaatgtggcag---
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GGTGTTGCCGCTGGTGCTGCTCTATTATTTGCTGCACCTGCAATTGCATTTGCCTGGTGGCGTCGAAGGAAACCACAAGAATTTTTCTTTGATGTGCCTGgtgagcaatcaa-agaagaatgggtataacagtttttgaacttatttaaagaatatataatttgatttccttgaatatgtttgcag
upper sequence: GRMZM2G384439_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA20G31320.1 (Glycine max), 5'ss of exon 8
GGAGTGGCTGCTGGTGCAGCCTTGCTATTTGCTATTCCTGCAATTAGTTTTGCCTATTGGCGGCGCAGGAAACCACAAGAACATTTCTTTGATGTACCTGgtaagtattcaacaggagaataacttagggaa---caacattgaatttgaattaacttaatgtgaga-cttcgaatgtggcag---
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GGAGTTGCTGCTGGTGCTGCTCTATTATTTGCTGCACCTGCAATTGCATTTGCCTGGTGGCGTCGAAGGAAACCACAAGAATTTTTCTTTGATGTGCCTGgtgagcaatca-tagaagaatgggtataacagtttctaaacctgtttaaagaatatatagtttgatttccttgcttatgtttgcag
upper sequence: GRMZM2G384439_T01 (Zea mays), 5'ss of exon 8
lower sequence: Vv07s0031g01410.t01 (Vitis vinifera), 5'ss of exon 8
GGAGTGGCTGCTGGTGCAGCCTTGCTATTTGCTATTCCTGCAATTAGTTTTGCCTATTGGCGGCGCAGGAAACCACAAGAACATTTCTTTGATGTACCTGgtaagtattcaac---aggagaataacttagggaacaacattgaatttgaa--ttaacttaatgtgagacttcgaatgtggcag
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GGAGTGGCTGCTGGTGCTGCTTTACTGTTTGCTGCACCAGCAATTGGTTTTGCATGGTGGCGGCGGAGGAAGCCACAAGAACATTTCTTTGATGTACCTGgtttgtactttacctaaaaaaaatggattaacttgattgtttggattttaaatttattttcattggctacatctctcct--cag
upper sequence: GRMZM2G384439_T01 (Zea mays), 5'ss of exon 8
lower sequence: Vv18s0164g00070.t01 (Vitis vinifera), 5'ss of exon 8
GGAGTGGCTGCTGGTGCAGCCTTGCTATTTGCTATTCCTGCAATTAGTTTTGCCTATTGGCGGCGCAGGAAACCACAAGAACATTTCTTTGATGTACCTGgtaagtattcaacaggagaataacttagggaacaacattgaatttgaattaacttaatgtgagacttcgaatgtg-gcag
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GGTGTGGCTGCTGGTGCTGCTTTACTATTTGCTGCTCCTGCAATTGGTTTTGCATGGTGGCGCCGAAGGAAACCACAAGAATATTTCTTTGATGTACCTGgttagtggtttaactgaaaaagatt-----attaaccttgcgtatggat-agattatcatttgtttacgtctctttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|26558051|gb|CA830286.1|CA830286EST: TGCCTATTGGCGGCGCAGGAAACCACAAGAACATTTCTTTGATGTACCTG CCGAGGAAGATCCAGAGGTGCATCTTGGCCAGCTTAAAAGATTTTCACTAC
genomic: TGCCTATTGGCGGCGCAGGAAACCACAAGAACATTTCTTTGATGTACCTGgtaagtattc ... aatgtggcagCCGAGGAAGATCCAGAGGTGCATCTTGGCCAGCTTAAAAGATTTTCACTAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGAGTGGCTGCTGGTGCAGCCTTGCTATTTGCTATTCCTGCAATTAGTTTTGCCTATTGGCGGCGCAGGAAACCACAAGAACATTTCTTTGATGTACCTGgtaagtattcaacaggagaataacttagggaacaacattgaatttgaattaacttaatgtgagacttcgaatgtggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC