Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAGGTTGATGATGTTGTTACTTTTCCATCAGACTGTCAACCATGCAAAATCTGTAGTCAGGAATTGTCTGATGTTGCTTCTGTTGAGGGTAATCTTAGgtaatataatatatagtcagaaaatcaatgtcatatattaggttcttcactcaagtttattgcacaatacctgttacatgcattttctgacacatggtttatggtttacag

Basic information

species Zea mays
transcript GRMZM2G376074_T01
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211008051|gb|FL363351.1|FL363351
EST:     ATCTGTAGTCAGGAATTGTCTGATGTTGCTTCTGTTGAGGGTAATCTTAG                         AGCAGTAAAACTTGAGCAACGACACAAACATGAAAAGTTAATATCTGGGAA
genomic: ATCTGTAGTCAGGAATTGTCTGATGTTGCTTCTGTTGAGGGTAATCTTAGgtaatataat ... tggtttacagAGCAGTGAAACTTGAGCAACGATACAAACATGAAAAGTTAATATCTGGGAA
EST: gi|32931325|gb|CF036137.1|CF036137
EST:     ATCTGTAGTCAGGAATTGTCTGATGTTGCTTCTGTTGAGGGTAATCTTAG                         AGCAGTAAAACTTGAGCAACGACACAAACATGAAAAGTTAATATCTGGGAA
genomic: ATCTGTAGTCAGGAATTGTCTGATGTTGCTTCTGTTGAGGGTAATCTTAGgtaatataat ... tggtttacagAGCAGTGAAACTTGAGCAACGATACAAACATGAAAAGTTAATATCTGGGAA
EST: gi|50331242|gb|CO526368.1|CO526368
EST:     ATCTGTAGTCAGGAATTGTCTGATGTTGCTTCTGTTGAGGGTAATCTTAG                         AGCAGTGAAACTTGAGCAACGATACAAACATGAAAAGTTAATATCTGGGAA
genomic: ATCTGTAGTCAGGAATTGTCTGATGTTGCTTCTGTTGAGGGTAATCTTAGgtaatataat ... tggtttacagAGCAGTGAAACTTGAGCAACGATACAAACATGAAAAGTTAATATCTGGGAA
EST: gi|211061749|gb|FL343242.1|FL343242
EST:     ATCTGTAGTCAGGAATTGTCTGATGTTGCTTCTGTTGAGGGTAATCTTAG                         AGCAGTAAAACTTGAGCAACGACACAAACATGAAAAGTTAATATCTGGGAA
genomic: ATCTGTAGTCAGGAATTGTCTGATGTTGCTTCTGTTGAGGGTAATCTTAGgtaatataat ... tggtttacagAGCAGTGAAACTTGAGCAACGATACAAACATGAAAAGTTAATATCTGGGAA