Sequence
atgc intronic sequence ATGC exonic sequenceTCCACGTCGCCCTGAGCTGAGGCTTATATTGATGAGTGCAACCCTTAATGCTGAGCTATTCTCTTCATACTTTGGTGGAGCACCCATGATACATATACCTgtaagatattttcttaatacctttttgcattcattcttttctgcttttagtcaataggcattggttcatacttcactcccatctttcttcattgtttcag...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G373175_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os01g02884.1 (Oryza sativa), 5'ss of exon 2
TCCACGTCGCCCTGAGCTGAGGCTTATATTGATGAGTGCAACCCTTAATGCTGAGCTATTCTCTTCATACTTTGGTGGAGCACCCATGATACATATACCTgtaagatattttcttaatacctttttgcattcattcttttctgcttttagtcaataggcattg-gttcatacttcactcccatctttcttcattgtttcag-
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TCCACGCCGGCCTGAGCTAAGACTTGTTTTGATGAGTGCAACCCTTAACGCTGAGTTATTCTCTTCATACTTTGGTGGAGCTCCCATGATACATATACCTgtaagatattt-cttaaggcatttt-gagttcactcgtctttgtctttactttatcctttctgcgtctgcaactctgttggaatttttaatgaagtcacaat
upper sequence: GRMZM2G373175_T02 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA08G05480.1 (Glycine max), 5'ss of exon 8
TCCACGTCGCCCTGAGCTGAGGCTTATATTGATGAGTGCAACCCTTAATGCTGAGCTATTCTCTTCATACTTTGGTGGAGCACCCATGATACATATACCTgtaagatattttcttaatacctttttgcattcattcttttctgcttttagtcaatag-gcattggttcatacttcactcccatctt-tcttcattgtttcag---
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CCCTCATCGCCCTGATTTGAGGTTGATTTTGATGAGTGCTACCTTAAATGCTGAGCTTTTTTCTTCATACTTTAATGGTGCTCCAACTATGCATATTCCTgtaag-----ttcagaatacttatttctgtaatctgtgtttgaagttcaattgctgtcaccctaatatgttttatcatatcatcctatttccacagttggaatat
upper sequence: GRMZM2G373175_T02 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA05G34180.1 (Glycine max), 5'ss of exon 8
TCCACGTCGCCCTGAGCTGAGGCTTATATTGATGAGTGCAACCCTTAATGCTGAGCTATTCTCTTCATACTTTGGTGGAGCACCCATGATACATATACCTgtaagatattttcttaatacctttttgcattcattcttttctgcttttagtcaatag-gcattggttcatacttcactcccatctt-tcttcattgtttcag----
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CCATCATCGTCCTGATTTGAGGTTGATTTTGATGAGTGCAACCTTAAATGCTGAGCTATTTTCTTCATACTTTAATGGTGCTCCAACTATGCATATTCCTgtaag-----ttcaggatactcatttctgta-atctgagttgaagttcagttgctgtcacactaatatgttttatcatatcatcccatttccacagttggaatatt
upper sequence: GRMZM2G373175_T02 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA09G18490.1 (Glycine max), 5'ss of exon 3
TCCACGTCGCCCTGAGCTGAGGCTTATATTGATGAGTGCAACCCTTAATGCTGAGCTATTCTCTTCATACTTTGGTGGAGCACCCATGATACATATACCTgtaagatatttt--cttaatacctttttgcattcattcttttct---gcttttagtcaataggcattggttcatacttcactcccatctttcttcattgtttcag
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AGCCCGCCGACCAGAACTGAAACTGATTTTAATGAGTGCTACCCTTGATGCTGAGCTGTTCTCTTCATATTTTAATGGTGCTGCAACTATGAAGATTCCAgtatgttacataaactaaatgacatagcttgtttatgttgtcaaagggatatatatcactaggaatttactacgattgatggatcatgaatcttagagag-----
upper sequence: GRMZM2G373175_T02 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA20G25800.1 (Glycine max), 5'ss of exon 11
TCCACGTCGCCCTGAGCTGAGGCTTATATTGATGAGTGCAACCCTTAATGCTGAGCTATTCTCTTCATACTTTGGTGGAGCACCCATGATACATATACCTgtaagatattttcttaatacctttttgcattcattcttttctgcttttagtcaataggcatt--ggttcatactt-cactcccatctttcttcattgtttcag--
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TCCACATCGACCAGAACTGAAACTGATTTTGATGAGTGCTACCCTAGATGCTGAGCTCTTCTCTTCATACTTTAATGGGGCCCCAATTATGTTTATTCCGgtgcg-----ttactgaaactaagtggtattccttgtattgtgatgggggattatgaacctctaagtacaaagatataaaatgagatgatttgctaggtataata
upper sequence: GRMZM2G373175_T02 (Zea mays), 5'ss of exon 8
lower sequence: Vv17s0000g03030.t01 (Vitis vinifera), 5'ss of exon 7
TCCACGTCGCCCTGAGCTGAGGCTTATATTGATGAGTGCAACCCTTAATGCTGAGCTATTCTCTTCATACTTTGGTGGAGCACCCATGATACATATACCTgtaagat----attttcttaatacct---ttttgcattcattc--ttttctgcttttagtcaataggcattggttcatacttcactcccatctttcttcattgtttcag
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TCCTCGTCGGCCAGAATTGAGGCTGATTCTGATGAGTGCAACTCTTAATGCTGAGCTTTTTTCCTCCTACTTTGGTGGTGCTCCAAGTATCCATATTCCTgtaagtttaagatgccattatcatttgcattaggcactagtcccatgttttcatttctttccccaatcaatgaag-agatccaggtggaattgtcactcac--------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|31351858|gb|CD436215.1|CD436215EST: CTGAGCTATTCTCTTCATACTTTGGTGGAGCACCCATGATACATATACCT GGTTTTACATATCCTGTCCGGAGTCATTTTCTGGAAGATATTCTTGAAATT
genomic: CTGAGCTATTCTCTTCATACTTTGGTGGAGCACCCATGATACATATACCTgtaagatatt ... ctcaacttagGGTTTTACATATCCTGTCCGGAGTCATTTTCTGGAAGATATTCTTGAAATT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCCACGTCGCCCTGAGCTGAGGCTTATATTGATGAGTGCAACCCTTAATGCTGAGCTATTCTCTTCATACTTTGGTGGAGCACCCATGATACATATACCTgtaagatattttcttaatacctttttgcattcattcttttctgcttttagtcaataggcattggttcatacttcactcccatctttcttcattgtttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA