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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCACCACCGAGCAGAAGTACAGCTTGGTGAACCAGGATGGCTGGGCCATCGAGAAGGTGATGACCCTCCAAGGTGTTCTGCTCGCAGACCACTTCAATgtaaggccctcctcctccatccaccaccatctgttcttggaacttttcttggactcgctttgagatatggttcgtgtgatcgtacag

Basic information

species Zea mays
transcript GRMZM2G372877_T01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G372877_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os06g40570.1 (Oryza sativa), 5'ss of exon 8
GGCCACCACCGAGCAGAAGTACAGCTTGGTGAACCAGGATGGCTGGGCCATCGAGAAGGTGATGACCCTCCAAGGTGTTCTGCTCGCAGACCACTTCAATgtaaggc-cctcctcctccatccaccaccatctgttcttggaacttttcttggactcgctttgagatatggttcgtgtgatcgtacag-----------------------------------------------------------------------------------------------
  |||||||  |||||| |||   | | |||||||| || ||||||||||| ||  ||||||||| ||| ||||||||||| || |  |||  ||||||||||||    | | || | ||||    ||  |  ||| |      ||   |   | |    |  ||||   |    | || |  |  |                                                                                                
AACCACCACTCAGCAGAGGTATGCCCTAGTGAACCAAGAAGGCTGGGCCATTGAAGAGGTGATGAGCCTACAAGGTGTTCTACTGGGGGACTGCTTCAATgtaagatgtcccttcatgcatctcttactctgcgttgtaattttttaattcaaaatt-tatcaagattctgaagctatggtgttggaaatataatatgagttagacatcaccagcttgtgttttctttgaattgttcttgcttaactagcccttaacaaatatcaatgattcttaatttgcag