1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTAATCATAGGCTCACCTGAACTTAAAGCTAATCATTCCATACAACAAATTGTTGAAGTTATTTCAGATCATGAGAAGTATCCAAGgtatgtatggttgacggtcttttgactaaaaacttttatgctcacttactatgctactttcgattacaaatggacacggtgtgagttgattttcacctct...
species | Zea mays |
transcript | GRMZM2G362850_T03 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TCCATACAACAAATTGTTGAAGTTATTTCAGATCATGAGAAGTATCCAAG ATGTGAAGGACATAAAGTGTGTGATAAATTATGATTTTCCAACAACTCTTGEST: gi|88752664|gb|DY536805.1|DY536805
genomic: TCCATACAACAAATTGTTGAAGTTATTTCAGATCATGAGAAGTATCCAAGgtatgtatgg ... gattttgcagATGTGAAGGACATAAAGTGTGTGATAAATTATGATTTTCCAACAACTCTTG
EST: TCCATACAACAAATTGTTGAAGTTATTTCAGATCATGAGAAGTATCCAAG ATGTGAAGGACATAAAGTGTGTGATAAATTATGATTTTCCAACAACTCTTGEST: gi|78104793|gb|DV523211.1|DV523211
genomic: TCCATACAACAAATTGTTGAAGTTATTTCAGATCATGAGAAGTATCCAAGgtatgtatgg ... gattttgcagATGTGAAGGACATAAAGTGTGTGATAAATTATGATTTTCCAACAACTCTTG
EST: TCCATACAACAAATTGTTGAAGTTATTTCAGATCATGAGAAGTATCCAAG ATGTGAAGGACATAAAGTGTGTGATAAATTATGATTTTCCAACAACTCTTG
genomic: TCCATACAACAAATTGTTGAAGTTATTTCAGATCATGAGAAGTATCCAAGgtatgtatgg ... gattttgcagATGTGAAGGACATAAAGTGTGTGATAAATTATGATTTTCCAACAACTCTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAATCATAGGCTCACCTGAACTTAAAGCTAATCATTCCATACAACAAATTGTTGAAGTTATTTCAGATCATGAGAAGTATCCAAGgtatgtatggttgacggtcttttgactaaaaacttttatgctcacttactatgctactttcgattacaaatggacacggtgtgagttgattttcacctct
- - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actaaaaa