1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTAATCATAGGCTCACCTGAACTTAAAGCTAATCATTCCATACAACAAATTGTTGAAGTTATTTCAGATCATGAGAAGTATCCAAGgtatgtatggttgacggtcttttgactaaaaacttttatgctcacttactatgctactttcgattacaaatggacacggtgtgagttgattttcacctctttcccacag
species | Zea mays |
transcript | GRMZM2G362850_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TCCATACAACAAATTGTTGAAGTTATTTCAGATCATGAGAAGTATCCAAG ACTCAGTAAGCTCTTGTCTGATCTAATGGATGGGAGCCGTATCTTGATATTEST: gi|19058018|gb|BM736685.1|BM736685
genomic: TCCATACAACAAATTGTTGAAGTTATTTCAGATCATGAGAAGTATCCAAGgtatgtatgg ... tttcccacagACTCAGTAAGCTCTTGTCTGATCTAATGGATGGGAGCCGTATCTTGATATT
EST: TCCATACAACAAATTGTTGAAGTTATTTCAGATCATGAGAAGTATCCAAG ACTCAGTAAGCTCTTGTCTGATCTAATGGATGGGAGCCGTATCTTGATATTEST: gi|19350987|gb|BM895519.1|BM895519
genomic: TCCATACAACAAATTGTTGAAGTTATTTCAGATCATGAGAAGTATCCAAGgtatgtatgg ... tttcccacagACTCAGTAAGCTCTTGTCTGATCTAATGGATGGGAGCCGTATCTTGATATT
EST: TCCATACAACAAATTGTTGAAGTTATTTCAGATCATGAGAAGTATCCAAG ACTCAGTAAGCTCTTGTCTGATCTAATGGATGGGAGCCGTATCTTGATATTEST: gi|19350988|gb|BM895520.1|BM895520
genomic: TCCATACAACAAATTGTTGAAGTTATTTCAGATCATGAGAAGTATCCAAGgtatgtatgg ... tttcccacagACTCAGTAAGCTCTTGTCTGATCTAATGGATGGGAGCCGTATCTTGATATT
EST: TCCATACAACAAATTGTTGAAGTTATTTCAGATCATGAGAAGTATCCAAG ACTCAGTAAGCTCTTGTCTGATCTAATGGATGGGAGCCGTATCTTGATATTEST: gi|87152035|gb|DY396824.1|DY396824
genomic: TCCATACAACAAATTGTTGAAGTTATTTCAGATCATGAGAAGTATCCAAGgtatgtatgg ... tttcccacagACTCAGTAAGCTCTTGTCTGATCTAATGGATGGGAGCCGTATCTTGATATT
EST: TCCATACAACAAATTGTTGAAGTTATTTCAGATCATGAGAAGTATCCAAG ACTCAGTAAGCTCTTGTCTGATCTAATGGATGGGAGCCGTATCTTGATATTEST: gi|18965091|gb|BM661386.1|BM661386
genomic: TCCATACAACAAATTGTTGAAGTTATTTCAGATCATGAGAAGTATCCAAGgtatgtatgg ... tttcccacagACTCAGTAAGCTCTTGTCTGATCTAATGGATGGGAGCCGTATCTTGATATT
EST: TCCATACAACAAATTGTTGAAGTTATTTCAGATCATGAGAAGTATCCAAG ACTCAGTAAGCTCTTGTCTGATCTAATGGATGGGAGCCGTATCTTGATATTEST: gi|116817908|gb|EC860818.1|EC860818
genomic: TCCATACAACAAATTGTTGAAGTTATTTCAGATCATGAGAAGTATCCAAGgtatgtatgg ... tttcccacagACTCAGTAAGCTCTTGTCTGATCTAATGGATGGGAGCCGTATCTTGATATT
EST: TCCATACAACAAATTGTTGAAGTTATTTCAGATCACGAGAAGTATCCAAG ACTCAGTAAGCTCTTGTCTGATCTAATGGATGGGAGCCGTATCTTGATATT
genomic: TCCATACAACAAATTGTTGAAGTTATTTCAGATCATGAGAAGTATCCAAGgtatgtatgg ... tttcccacagACTCAGTAAGCTCTTGTCTGATCTAATGGATGGGAGCCGTATCTTGATATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAATCATAGGCTCACCTGAACTTAAAGCTAATCATTCCATACAACAAATTGTTGAAGTTATTTCAGATCATGAGAAGTATCCAAGgtatgtatggttgacggtcttttgactaaaaacttttatgctcacttactatgctactttcgattacaaatggacacggtgtgagttgattttcacctctttcccacag
- - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT