Sequence
atgc intronic sequence ATGC exonic sequenceAGAGAAAGAGTATGAGATGGCTCTGCAGGACAGAGTAATGGAAGAGACCAAAGAAAAGAAAAATGCTGTGGAAGCTTATGTCTATGACATGCGTAACAAGgtatgtggagatgcatgccctgatggtttttcttgtgaacataagcagtatctaatggtttttcttccttgtatttag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G361605_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os05g08840.1 (Oryza sativa), 5'ss of exon 5
AGAGAAAGAGTATGAGATGGCTCTGCAGGACAGAGTAATGGAAGAGACCAAAGAAAAGAAAAATGCTGTGGAAGCTTATGTCTATGACATGCGTAACAAGgtatgtggagatgcatgccctgatggtttttcttgtgaacataagcagtatctaatggtttttcttccttgtatttag
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TGAGAATGAGTATGAAATGGCTCTTCAGGACAGAGTAATGGAAGAAACCAAGGAGAAAAAGAATGCTGTCGAGGCTTATGTTTATGACATGCGTAACAAGgtatgccgagtttaattttgtgatgatatat---gaacatttgaacagtacctgatgagttt-----cttgcgttcag
upper sequence: GRMZM2G361605_T02 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA08G22100.1 (Glycine max), 5'ss of exon 5
AGAGAAAGAGTATGAGATGGCTCTGCAGGACAGAGTAATGGAAGAGACCAAAGAAAAGAAAAATGCTGTGGAAGCTTATGTCTATGACATGCGTAACAAGgtatgtggagatgcatgccctgatggtttttcttg--tgaacataagc----agtatcta----atggtttttcttccttgtatttag-------------
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AGAAAAGGAGTTTGAAATGGCTTTGCAAGATCGTGTGATGGAAGAAACAAAAGACAAGAAAAATGCAGTTGAGGCTTATGTTTATGACATGAGAAACAAGgtgggtgttatctttttcttcttctcttactcagggtctaacatcaactacaaatgcctgtcatataattgttgatttttttttttccgttatcatttcag
upper sequence: GRMZM2G361605_T02 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA15G01750.1 (Glycine max), 5'ss of exon 6
AGAGAAAGAGTATGAGATGGCTCTGCAGGACAGAGTAATGGAAGAGACCAAAGAAAAGAAAAATGCTGTGGAAGCTTATGTCTATGACATGCGTAACAAGgtatgtggagatgcatgccctgatggtttttcttg--tgaacataagcagtat--ctaatggtttttcttccttgt-atttag-
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AGAGAAGGAGTTTGAAATGGCTTTGCAAGATAGAGTGATGGAGGAAACAAAGGATAAGAAAAATGCAGTAGAGGCTTATGTTTATGACACGAGAAACAAGgt--gaggattgccatggttttcttgttatttaaggatgaat-tttgtattattactaaaactaatttctcattatcatttcag
upper sequence: GRMZM2G361605_T02 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA13G43630.2 (Glycine max), 5'ss of exon 6
AGAGAAAGAGTATGAGATGGCTCTGCAGGACAGAGTAATGGAAGAGACCAAAGAAAAGAAAAATGCTGTGGAAGCTTATGTCTATGACATGCGTAACAAGgtatg--tggagatgcatgccctgatggttt-------ttcttgtgaacataagcagtatctaatggtttttcttccttgtatttag-
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AGAGAAGGAGTTTGAAATGGCTTTGCAAGATAGAGTCATGGAGGAAACGAAAGATAAGAAAAATGCAGTTGAGGCTTATGTTTATGACATGAGAAACAAGgtgaggattgccatggttttcttgttatttgaggtcaatttttttatttttaattattactaaaactaatttcttgatatcattttag
upper sequence: GRMZM2G361605_T02 (Zea mays), 5'ss of exon 8
lower sequence: AT1G79930.1 (Arabidopsis thaliana), 5'ss of exon 6
AGAGAAAGAGTATGAGATGGCTCTGCAGGACAGAGTAATGGAAGAGACCAAAGAAAAGAAAAATGCTGTGGAAGCTTATGTCTATGACATGCGTAACAAGgtatgtggagatgcatgccctgatggtttttcttgtgaacat---aagcagtatctaatggtttttc---ttccttgtatttag
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GGAGAAGGAATTTGAGATGGCTTTGCAAGACAGAGTTATGGAAGAGACCAAGGACCGGAAGAATGCTGTTGAGTCTTATGTTTATGATATGCGGAACAAAgtgagaatctttatttcgtcttttcattggcagtatgcatatgtaaagttgtgagtattgggtactaacgtgtcttgttttcag
upper sequence: GRMZM2G361605_T02 (Zea mays), 5'ss of exon 8
lower sequence: AT1G79920.2 (Arabidopsis thaliana), 5'ss of exon 6
AGAGAAAGAGTATGAGATGGCTCTGCAGGACAGAGTAATGGAAGAGACCAAAGAAAAGAAAAATGCTGTGGAAGCTTATGTCTATGACATGCGTAACAAGgtatgtggagatgcatgccctgatggtttttcttgtgaacataagcagtatct-----aatggtttttc---ttccttgtatttag
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GGAGAAGGAATTTGAGATGGCTCTGCAAGACAGAGTTATGGAAGAGACCAAGGACCGGAAGAATGCTGTTGAGTCTTATGTTTATGATATGCGAAACAAAgtgag-aaatctttatttcgtcttttcattggcagtatgcatatgtaaagttttgagtattgagtactgacgtgtcttgttttcag
upper sequence: GRMZM2G361605_T02 (Zea mays), 5'ss of exon 8
lower sequence: EFJ12319 (Selaginella moellendorffii), 5'ss of exon 5
AGAGAAAGAGTATGAGATGGCTCTGCAGGACAGAGTAATGGAAGAGACCAAAGAAAAGAAAAATGCTGTGGAAGCTTATGTCTATGACATGCGTAACAAGgtatgtggagatgcatgccctgatggtttttcttgtgaacataagcagtatctaatggtttttcttccttgtatttag
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GGAGAAGGAGTACGAGTATGCCCTTCAGGATAGAGTCATGGAAGAAACCAAAGACAGAAAGAATGCAGTGGAAGCCTACGTCTATGACATGCGGAACAAGgtttgcatct-cgtatg------tggtttgtaattttaatggctgctgcttcttttcag-------------------
upper sequence: GRMZM2G361605_T02 (Zea mays), 5'ss of exon 8
lower sequence: EFJ19903 (Selaginella moellendorffii), 5'ss of exon 5
AGAGAAAGAGTATGAGATGGCTCTGCAGGACAGAGTAATGGAAGAGACCAAAGAAAAGAAAAATGCTGTGGAAGCTTATGTCTATGACATGCGTAACAAGgtatgtggagatgcatgccctgatggtttttcttgtgaacataagcagtatctaatggtttttcttccttgtatttag
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GGAGAAGGAGTACGAGTATGCCCTTCAGGATAGAGTTATGGAAGAAACCAAAGACAGAAAGAATGCAGTGGAAGCCTACGTCTATGACATGCGGAACAAGgtttgtcatctcgtatg------tgatttgtaattttaatggctgctgcttcttttcag-------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|67023470|gb|CO452219.1|CO452219EST: AAGAAAAGAAAAATGCTGTGGGAGCTTATGTCTATGACATGCGTAACAAG CTGTACGACAAGTATAACGATTTTGTCACACCCGAGGAGAAGGAAGGGTTG
genomic: AAGAAAAGAAAAATGCTGTGGAAGCTTATGTCTATGACATGCGTAACAAGgtatgtggag ... ttgtatttagCTGTACGACAAGTATAACGATTTTGTCACACCCGAGGAGAAGGAAGGGTTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGAGAAAGAGTATGAGATGGCTCTGCAGGACAGAGTAATGGAAGAGACCAAAGAAAAGAAAAATGCTGTGGAAGCTTATGTCTATGACATGCGTAACAAGgtatgtggagatgcatgccctgatggtttttcttgtgaacataagcagtatctaatggtttttcttccttgtatttag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG