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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAATCAAGAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAGgtatgtttgcctgaaacggatccttatatcttcttactgtttggctattactacgtcccttctcgaatatttgtggctcgctagttcatttttgaactaaaacgcgacaaataaaaaagaaaggagggagtagaatgttagtgctgaatctaattcttgtgcatcacag

Basic information

species Zea mays
transcript GRMZM2G358059_T01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G358059_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os07g14270.1 (Oryza sativa), 5'ss of exon 8
AAAATCAAGAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAGgtatgtttgcctgaaacggatc--cttatatcttcttactgtttggctattactacgtcccttctcgaatatttgtggctcgctagttcatttttgaactaaaacgcgacaaataaaaaagaaaggagggagtagaatgttagtgctgaatctaattcttgtgcatcacag
|||||||||||||| |||||||| || |||||||||||||| ||||| ||||||||||||||  ||||||  ||  || |  |||     | |  | | ||  | | ||      | | ||||  | | |||    ||   | |||||                                                                                 
AAAATCAAGAACCCTAACTACCAAGGCAAATGGAAGGCACCGATGATCGACAACCCAGgtataattgcctttaattgaacaacttggtattacacatttttcagatgttgaactctgcattctgaactgtttc---ctttgtggttcacag------------------------------------------------------------------------------

upper sequence: GRMZM2G358059_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA20G23080.2 (Glycine max), 5'ss of exon 8
AAAATCAAGAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAGgtatgtttgcctgaaacggatccttatatcttcttactgtttggctattactacgtcccttctcgaatatttgtggctcgctagttcatttttgaactaaaacgcgacaaataaaaaagaaaggagggagtagaatgttagtgctgaatctaattcttgtgcatcacag
|||||||||||||| |||||  | || ||||||||||||||  ||||||| |||||||||   ||      | |||      || |   |  || | |||   | | | | | |     ||  || ||   |       || |     ||||||  || |     ||                                                            
AAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAGgttcatt------atacgcccttctacacagtagtaatattta--tgtaaattcttttgcactataagataaata------tattcagcatttgaaa-aacatttatcag-----------------------------------------------------------

upper sequence: GRMZM2G358059_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA10G28890.2 (Glycine max), 5'ss of exon 8
AAAATCAAGAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAGgtatgtttgcctgaaacggatccttatatcttcttactgtttggctattactacgtcccttctcgaatatttgtggctcgctagttcatttttgaactaaaacgcgacaaataaaaaagaaaggagggagtagaatgttagtgctgaatctaattcttgtgcatcacag
|||||||||||||| |||||  | || ||||||||||||||  ||||||| |||||||||   ||        |   |  ||| ||       || ||     ||||  ||       | | | || | |  |         ||||   ||  |  || |   | ||                                                            
AAAATCAAGAACCCCAACTATAAAGGAAAATGGAAGGCACCATTGATTGATAACCCAGgttcatt--------atacactcttctac------accgtagtaatatttttataaattattttgcat-tataagataaatatattcaacatttgaaaaacatttgtcag-----------------------------------------------------------

upper sequence: GRMZM2G358059_T01 (Zea mays), 5'ss of exon 8
lower sequence: Vv07s0005g01390.t01 (Vitis vinifera), 5'ss of exon 8
AAAATCAAGAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAGgta--tgtttgcctgaaacggatccttatatcttcttactgtttggctattactacgtccc-ttctcgaatatttgtggctcgctagttcatttttgaactaaaacgcgacaaataaaaaagaaaggagggagtagaatgttagtgctgaatctaattcttgtgcatcacag
 |||| || ||||| |||||| |||| |||||||||||||||||||||||||||||||||   ||  |     |     |   ||  || |  || | || | | | ||  |   |    || || |||| |  |   |    |   ||| ||  |  |                   ||                                                  
CAAATAAAAAACCCCAACTACAAGGGAAAATGGAAGGCACCTATGATTGACAACCCAGgttcttgcatattccacttcaacattttaatttgtttgcagtcttggtgttctttaatgttattttctaatactgatatattttcaa--catcttaaatttgtgtgttttttgcctttttag--------------------------------------------------

upper sequence: GRMZM2G358059_T01 (Zea mays), 5'ss of exon 8
lower sequence: Vv14s0060g01290.t01 (Vitis vinifera), 5'ss of exon 8
AAAATCAAGAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAGgtatgtttgcctgaaacggatccttatatcttcttactgtttggctattactacgtcccttctcgaatatttgtggctcgctagttcatttttgaactaaaacgcgacaaataaaaaagaaaggagggagtagaatgttagtgctgaatctaattcttgtgcatcacag
||||| ||||| || |||||| |||| |||||||||||||| ||||||||||||||||||   | | | || | | | | ||| |||    |   | |||   |  |      ||     ||  | | || |     | |  |  |||||  |                                                                          
AAAATTAAGAATCCCAACTACAAGGGAAAATGGAAGGCACCAATGATTGACAACCCAGgttcctatccatgcacctgcttcttctatgccatagttatttt-ttggtttggtctcaacattcagacacttataaactgttcat--attttacag-------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148931875|gb|EC877339.2|EC877339
EST:     GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAG                         ATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
genomic: GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAGgtatgtttgc ... tgcatcacagATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
EST: gi|84980101|gb|DW530450.1|DW530450
EST:     AAATGGAAGGCACCTATGATTGACAACCCAG                         ATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
genomic: AAATGGAAGGCACCTATGATTGACAACCCAGgtatgtttgc ... tgcatcacagATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
EST: gi|33095282|gb|CF055276.1|CF055276
EST:     GAACCAAAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAG                         ATTTTAAAGATGATCCATACATTTACGCCTTCGACAGCTTGAAGT
genomic: GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAGgtatgtttgc ... tgcatcacagATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGT
EST: gi|86467986|gb|DY234356.1|DY234356
EST:     GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAG                         ATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
genomic: GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAGgtatgtttgc ... tgcatcacagATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
EST: gi|149074502|gb|EE162898.2|EE162898
EST:     GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAG                         ATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
genomic: GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAGgtatgtttgc ... tgcatcacagATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
EST: gi|14883658|gb|BI273473.1|BI273473
EST:     GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAG                         ATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
genomic: GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAGgtatgtttgc ... tgcatcacagATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
EST: gi|14190892|gb|BG833122.1|BG833122
EST:     GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAG                         ATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
genomic: GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAGgtatgtttgc ... tgcatcacagATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
EST: gi|7162446|gb|AW520068.1|AW520068
EST:     GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAG                         ATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
genomic: GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAGgtatgtttgc ... tgcatcacagATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
EST: gi|14190894|gb|BG833124.1|BG833124
EST:     CCCGAACTACCAGGGTTAAAATGGAAGGCACCCTATGATTGACAACCCAG                         ATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
genomic: CCCGAACTACCAGGGT-AAA-TGGAAGGCACC-TATGATTGACAACCCAGgtatgtttgc ... tgcatcacagATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
EST: gi|37377946|gb|CF625620.1|CF625620
EST:     GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAG                         ATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
genomic: GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAGgtatgtttgc ... tgcatcacagATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
EST: gi|33096251|gb|CF056245.1|CF056245
EST:     GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAG                         ATTTTAAAGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
genomic: GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAGgtatgtttgc ... tgcatcacagATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
EST: gi|33100825|gb|CF060785.1|CF060785
EST:     GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAG                         ATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTAC
genomic: GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAGgtatgtttgc ... tgcatcacagATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTAC
EST: gi|149074540|gb|EE162939.2|EE162939
EST:     GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAG                         ATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
genomic: GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAGgtatgtttgc ... tgcatcacagATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
EST: gi|33093345|gb|CF053339.1|CF053339
EST:     GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAG                         ATTTTAAAGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTA
genomic: GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAGgtatgtttgc ... tgcatcacagATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTA
EST: gi|86470502|gb|DY236872.1|DY236872
EST:     GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAG                         ATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
genomic: GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAGgtatgtttgc ... tgcatcacagATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
EST: gi|33095007|gb|CF055001.1|CF055001
EST:     GAACCCTAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAG                         ATTTCAAGGATGATCC
genomic: GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAGgtatgtttgc ... tgcatcacagATTTTAAGGATGATCC
EST: gi|71442155|gb|DR823205.1|DR823205
EST:     GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAG                         ATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
genomic: GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAGgtatgtttgc ... tgcatcacagATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
EST: gi|32939080|gb|CF043899.1|CF043899
EST:     GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAG                         ATTTTAAAGATGATCCATACATTTACGCCTTCGACAGCTTGAAGT
genomic: GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAGgtatgtttgc ... tgcatcacagATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGT
EST: gi|37374548|gb|CF623645.1|CF623645
EST:     GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAG                         ATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
genomic: GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAGgtatgtttgc ... tgcatcacagATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
EST: gi|14190893|gb|BG833123.1|BG833123
EST:     GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAG                         ATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
genomic: GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAGgtatgtttgc ... tgcatcacagATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
EST: gi|32846617|gb|CD986298.1|CD986298
EST:     GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAG                         ATTTTAAAGATGATCCATACATTTACGCCTTCGACAGCTTGAAGT
genomic: GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAGgtatgtttgc ... tgcatcacagATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGT
EST: gi|84976665|gb|DW475087.1|DW475087
EST:     CGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAG                         ATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
genomic: CGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAGgtatgtttgc ... tgcatcacagATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
EST: gi|32944583|gb|CF049402.1|CF049402
EST:     GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAG                         ATTTTAAAGATGATCCATACATTTACGCCTTCGACAGCTTGAAGT
genomic: GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAGgtatgtttgc ... tgcatcacagATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGT
EST: gi|6021565|gb|AW066493.1|AW066493
EST:     GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAG                         ATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
genomic: GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAGgtatgtttgc ... tgcatcacagATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
EST: gi|5268655|gb|AI770619.1|AI770619
EST:     GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAG                         ATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
genomic: GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAGgtatgtttgc ... tgcatcacagATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
EST: gi|33093443|gb|CF053437.1|CF053437
EST:     GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAG                         ATTTTAAAGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
genomic: GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAGgtatgtttgc ... tgcatcacagATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
EST: gi|148937046|gb|EC881219.2|EC881219
EST:     GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAG                         ATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
genomic: GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAGgtatgtttgc ... tgcatcacagATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
EST: gi|21088786|gb|BQ401099.1|BQ401099
EST:     CAGGGTAAATGGAAGGCACCTATGATTGACAACCCAG                         ATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
genomic: CAGGGTAAATGGAAGGCACCTATGATTGACAACCCAGgtatgtttgc ... tgcatcacagATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
EST: gi|4647548|gb|AI622623.1|AI622623
EST:     GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAG                         ATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
genomic: GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAGgtatgtttgc ... tgcatcacagATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
EST: gi|32943144|gb|CF047963.1|CF047963
EST:     GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAG                         ATTTTAAAGATGATCCATACATTTACGCCTTCGACAGCTTGAAGT
genomic: GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAGgtatgtttgc ... tgcatcacagATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGT
EST: gi|211100469|gb|FL191950.1|FL191950
EST:     GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAG                         ATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
genomic: GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAGgtatgtttgc ... tgcatcacagATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
EST: gi|32912239|gb|CF017051.1|CF017051
EST:     GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAG                         ATTTTAAAGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
genomic: GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAGgtatgtttgc ... tgcatcacagATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
EST: gi|84980708|gb|DW531057.1|DW531057
EST:     GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAG                         ATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
genomic: GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAGgtatgtttgc ... tgcatcacagATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
EST: gi|32940367|gb|CF045186.1|CF045186
EST:     GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAG                         ATTTTAAAGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
genomic: GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAGgtatgtttgc ... tgcatcacagATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
EST: gi|29544799|gb|CB605407.1|CB605407
EST:     GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAG                         ATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
genomic: GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAGgtatgtttgc ... tgcatcacagATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
EST: gi|33094313|gb|CF054307.1|CF054307
EST:     GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAG                         ATTTTAAAGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTAC
genomic: GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAGgtatgtttgc ... tgcatcacagATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTAC
EST: gi|88750940|gb|DY535081.1|DY535081
EST:     GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAG                         ATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
genomic: GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAGgtatgtttgc ... tgcatcacagATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
EST: gi|7216518|gb|AW562640.1|AW562640
EST:     GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAG                         ATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
genomic: GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAGgtatgtttgc ... tgcatcacagATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
EST: gi|71759740|gb|DR957677.1|DR957677
EST:     GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAG                         ATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
genomic: GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAGgtatgtttgc ... tgcatcacagATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
EST: gi|7162466|gb|AW520088.1|AW520088
EST:     GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAG                         ATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
genomic: GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAGgtatgtttgc ... tgcatcacagATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
EST: gi|148963936|gb|EE015057.2|EE015057
EST:     GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAG                         ATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
genomic: GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAGgtatgtttgc ... tgcatcacagATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
EST: gi|71432522|gb|DR813572.1|DR813572
EST:     GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAG                         ATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG
genomic: GAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAGgtatgtttgc ... tgcatcacagATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 920

AAAATCAAGAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAGgtatgtttgc ... tgcatcacagATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTGGCATTGAGCTGTGGCAG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 789

AAAATCAAGAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAGgtatgtttgc ... tgcatcacagATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTGGCATTGAGCTGTGGCAG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 774

AAAATCAAGAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAGgtatgtttgc ... tgcatcacagATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTGGCATTGAGCTGTGGCAG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 2861

AAAATCAAGAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAGgtatgtttgc ... tgcatcacagATTTTAAGGATGATCCATACATTTACGCCTTCGACAGCTTGAAGTACATTGGCATTGAGCTGTGGCAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAAATCAAGAACCCGAACTACCAGGGTAAATGGAAGGCACCTATGATTGACAACCCAGgtatgtttgcctgaaacggatccttatatcttcttactgtttggctattactacgtcccttctcgaatatttgtggctcgctagttcatttttgaactaaaacgcgacaaataaaaaagaaaggagggagtagaatgttagtgctgaatctaattcttgtgcatcacag

- - - - - - - - - - - - - - - TGGAAG