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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGTAGGAAGTGGACAACAGGATCATTTTCTCTTCGGCGACTCAAGTAACTGGGAAGTGCCATTTGTGCAGGGTTTTTTGATGACCCAAAACCATACAGgtttgcaccctgcacttgtgaacaataatgtccttgaagacctatctggtgctggtactgcagggattaacaactcaactagggaatcatcacacatgcataactttggacgtccag

Basic information

species Zea mays
transcript GRMZM2G353548_T05
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G353548_T05 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os02g18820.1 (Oryza sativa), 5'ss of exon 9
AATGTAGGAAGTGGACAACAGGATCATTTTCTCTTCGGCGACTCAAGTAACTGGGAAGTGCCATTTGTGCAGGGTTTTTTGATGACCCAAAACCATACAGgtttgcaccctgcac-ttgtgaacaataatgtccttgaagacctatctggtgctggtactgcagggattaacaactcaactagggaatcatcacacatgcataactttggacgtccag
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AATTCAGAGGGTGGAAATCATCATCATGATCTCTTCAGTGACTCGCGTAGCTGGGAGCTTCCCTTTTTGCAGGGCTGGTTCATGGCCCAAAATCATACAGgtttgcaccctgcaccttccaaatgatgatgcctttgta-------ctggaggcctaccttcttgtggtactggcactgct-gagactgattaaac-tgtgtaa--ttgaacttgcag