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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTTGGGAGATATGCTGCTGGATAGATCAAATGTTGCAGTGATGATGCGCTATGTTAGTTCCAAAGACAATCTTATGATTCTGATGAATCTCTTAAGGgtcagtgtacctcatttcactagtaggcaacttgagcttacaatctaacactctctgttccaaattatatgttgttttagcttttatatatacatagctc...

Basic information

species Zea mays
transcript GRMZM2G351417_T01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G351417_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os07g39630.1 (Oryza sativa), 5'ss of exon 8
TTGTTGGGAGATATGCTGCTGGATAGATCAAATGTTGCAGTGATGATGCGCTATGTTAGTTCCAAAGACAATCTTATGATTCTGATGAATCTCTTAAGGgtcagtgtacctcatttcactagtaggcaacttgagcttacaatctaacactctctgttccaaattatatgttgttttagcttttatatatacatagctc----
|| |||||||| |||||||| |||||||| ||   | |||| |||||||| ||||||||||| ||||| |||||||||||||| ||||||||||| || || |||  ||  || || ||        || || ||  | |||  |   ||| | || |   | | || ||  ||    ||    |     | ||| | |    
TTCTTGGGAGACATGCTGCTTGATAGATCCAACTCTACAGTCATGATGCGTTATGTTAGTTCAAAAGATAATCTTATGATTCTCATGAATCTCTTGAGAgtaagttcactccacttgacctt---ataattttagaatgcaacgtgcaactttatgctttca-tgatttgacgtacctgcaaacactagaaaatatcaccaaa

upper sequence: GRMZM2G351417_T01 (Zea mays), 5'ss of exon 8
lower sequence: EFJ36360 (Selaginella moellendorffii), 5'ss of exon 8
TTGTTGGGAGATATGCTGCTGGATAGATCAAATGTTGCAGTGATGATGCGCTATGTTAGTTCCAAAGACAATCTTATGATTCTGATGAATCTCTTAAGGgtcagtgtacctcatttcactagtaggcaacttgagctta--caatctaacactctctgttccaaattatatgttgttttagcttttatatatacatagctc
 |  | || |||||||| ||||||| ||||||   |||||||||||||||||||||    || ||||| || |||   ||  ||||||||||  |  |||| ||      ||||  ||  | |   | || |    |||     |||  |  || | |                                           
CTTCTCGGGGATATGCTCCTGGATAAATCAAACACTGCAGTGATGATGCGCTATGTCGTGTCAAAAGAGAACCTTCGAATCATGATGAATCTTCTGCGGgtaagc---tttcatggcaacattcttccacgtttttttaattgttctggccttcacag-------------------------------------------

upper sequence: GRMZM2G351417_T01 (Zea mays), 5'ss of exon 8
lower sequence: EFJ35844 (Selaginella moellendorffii), 5'ss of exon 8
TTGTTGGGAGATATGCTGCTGGATAGATCAAATGTTGCAGTGATGATGCGCTATGTTAGTTCCAAAGACAATCTTATGATTCTGATGAATCTCTTAAGGgtcagtgtacctcatttcactagtaggcaacttgagcttacaat-ctaacactctctgttccaaattatatgttgttttagcttttatatatacatagctc
 |  | || |||||||| ||||||| ||||||   |||||||||||||||||||||    || ||||| || |||   ||  ||||||||||  |  |||| ||   |  ||||  ||  | |   ||  ||    |||   | ||  |  || | |                                           
CTTCTCGGGGATATGCTCCTGGATAAATCAAACACTGCAGTGATGATGCGCTATGTCGTGTCAAAAGAGAACCTTCGAATCATGATGAATCTTCTCCGGgtaag---atttcatggcaacattcttcacgttttttttattgttctggccttcacag-------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60349070|gb|DN216043.1|DN216043
EST:     GCTATGTTAGTTCCAAAGACAATCTTATGATTCTGATGAATCTCTTAAGG                         GATTCGAGTAAAAATATCCAAATCGAGGCATTTCACGTGTTCAAG
genomic: GCTATGTTAGTTCCAAAGACAATCTTATGATTCTGATGAATCTCTTAAGGgtcagtgtac ... attttgtcagGATTCGAGTAAAAATATCCAAATCGAGGCATTTCACGTGTTCAAG
EST: gi|60401041|gb|DN233848.1|DN233848
EST:     GCTATGTTAGTTCCAAAGACAATCTTATGATTCTGATGAATCTCTTAAGG                         GATTCGAGTAAAAATATCCAAATCGAGGCATTTCACGTGTTCAAG
genomic: GCTATGTTAGTTCCAAAGACAATCTTATGATTCTGATGAATCTCTTAAGGgtcagtgtac ... attttgtcagGATTCGAGTAAAAATATCCAAATCGAGGCATTTCACGTGTTCAAG
EST: gi|60359357|gb|DN226330.1|DN226330
EST:     GCTATGTTAGTTCCAAAGACAATCTTATGATTCTGATGAATCTCTTAAGG                         GATTCGAGTAAAAATATCCAAATCGAGGCATTTCACGTGTTCAAG
genomic: GCTATGTTAGTTCCAAAGACAATCTTATGATTCTGATGAATCTCTTAAGGgtcagtgtac ... attttgtcagGATTCGAGTAAAAATATCCAAATCGAGGCATTTCACGTGTTCAAG