Sequence
atgc intronic sequence ATGC exonic sequenceCTCACTGTCATGTGCACAGGATGTATTTCATGGGCCCAAACACCTTCAGTGAACCTTGGCATCTCCCACACACCCCGCCAGAGCAGATTTCAGAGATTGTgtatgtactcccatcctttgttgtttgtatgtccattatttattatttttttttgtctccaaaattttcctgatccttgaatgtcctcctgtctctatcctttttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G350818_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os05g09360.1 (Oryza sativa), 5'ss of exon 13
CTCACTGTCATGTGCACAGGATGTATTTCATGGGCCCAAACACCTTCAGTGAACCTTGGCATCTCCCACACACCCCGCCAGAGCAGATTTCAGAGATTGTgtatgtactcccatcctttgttgtttgtatgtccattatttattatttttttttgtctccaaaattttcctgatccttgaatgtcctcctgtct-----ctatcctttttcag----------------------------------------------------
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CTCACTGTCATGTGCACAGGATGTATTTCATGGGTCCCAACACCTTCAGTGAACCTTGGCATCTACCACACACCCCACCTGAGCAGATTTCTGAGATTGTgtacgtagatctgtccacaagtaaatcaagattatttttgaacaacatgcattcagcctttgggctcttttgtcattcttttttccttatctttactggttttgctttttttgccacaaattttacctgtctcatttaagattatgtttatcgtatttttgttag
upper sequence: GRMZM2G350818_T02 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA05G36070.2 (Glycine max), 5'ss of exon 16
CTCACTGTCATGTGCACAGGATGTATTTCATGGGCCCAAACACCTTCAGTGAACCTTGGCATCTCCCACACACCCCGCCAGAGCAGATTTCAGAGATTGTgtatgtactcccatcctttgttgtttgtatgtccattatttattat---ttttttttgtctccaaaattttcctgatccttgaatgtcctcctgtctctatcctttttcag------------------------------------------
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CTCAGAGTCATGTGCACAGGTTGTATTTCCATGGCCCAAATACATTCAGTGAACCTTGGCATCTACTTCATTGTCCTCCAGAGCAAGTAAAAGATATTGTgtatgc-ctctttttccttaaaacatagttgatcctcatttagtgtcgatgtatttagtattttagttatgtacaccctgcaagaggctttcagttcatgttatgcattaaaattgaccatttaactattaagcatatcacttcataatgcag
upper sequence: GRMZM2G350818_T02 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA08G03550.1 (Glycine max), 5'ss of exon 17
CTCACTGTCATGTGCACAGGATGTATTTCATGGGCCCAAACACCTTCAGTGAACCTTGGCATCTCCCACACACCCCGCCAGAGCAGATTTCAGAGATTGTgtatgtactcccatcctttgttgtttgtatgtccattatttattat---ttttttttgtctccaaaattttcctgatccttgaatgtcctcctgtctctatcctttttcag-----------------------------------------
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CTCCGAGTCATGTGCACAGGTTGTATTTCCAGGGCCCAAATACATTCAGTGAACCTTGGCATCTACCTCATTGTCCTCCAGAGCAAGTAAAAGATATTGTgtatgc-ctctttttccttaaaatatagttgatcctcatctagtgtcaatgtatttagtattttagttatgtacaccctgcaagaggatttcagttaatgttaacattaaaattgacattttaactattaagtatatgacttcatattgcag
upper sequence: GRMZM2G350818_T02 (Zea mays), 5'ss of exon 8
lower sequence: AT5G11700.1 (Arabidopsis thaliana), 5'ss of exon 15
CTCACTGTCATGTGCACAGGATGTATTTCATGGGCCCAAACACCTTCAGTGAACCTTGGCATCTCCCACACACCCCGCCAGAGCAGATTTCAGAGATTGTgtatgtactcccatcctttgtt----gtt--tgtatgtccattatttattatttttttt-----tgtctccaaaattttcctgatccttgaatgtcctcctgtctctatcc--tttttcag
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CTCAGAGTCATGTGCATAGAATGTATTTTATGGGTCCTAATACATTCAGTGAACCGTGGCATCTCTCACACATTCCCCCGGAGGAGATTAAAGAGATAGTgtaagttgtttgttattttatttcaagctgatttaggaatgtttctcattgttttgtctatagatacttaataagtggccttggttctgaactatttttatattggttttgggttttttagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33770943|gb|CF273237.1|CF273237EST: GAACCTTGGCATCTCCCACACACCCCGCCAGAGCAGATTTCAGAGATTGT GTACGAAGATGCATTTAACAAATTTGTTGATGAGATCAATGCTCTTGCAGC
genomic: GAACCTTGGCATCTCCCACACACCCCGCCAGAGCAGATTTCAGAGATTGTgtatgtactc ... cctttttcagGTACGAAGATGCATTTAACAAATTTGTTGATGAGATCAATGCTCTTGCAGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTCACTGTCATGTGCACAGGATGTATTTCATGGGCCCAAACACCTTCAGTGAACCTTGGCATCTCCCACACACCCCGCCAGAGCAGATTTCAGAGATTGTgtatgtactcccatcctttgttgtttgtatgtccattatttattatttttttttgtctccaaaattttcctgatccttgaatgtcctcctgtctctatcctttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT