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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTTTATTATTCATGGCGTTGACATTTCCAGgtaatgcatatagcgacgaccgttgagatacattcaaggtttatcccaagtttgcaacagttgcatgattcacttcattcgaaagtattaacttctcctt...

Basic information

species Zea mays
transcript GRMZM2G348729_T01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G348729_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os03g21950.1 (Oryza sativa), 5'ss of exon 5
ATGTTTATTATTCATGGCGTTGACATTTCCAGgtaatgcatatagcgacgaccgttgagatacattcaaggtttatcccaagtttgcaacagttgcatgattcacttcattcgaaagtattaacttctcctt------------------------------------------------------------------------------------
                                || ||||| |||||  |  ||   |||||  ||||||||||| ||||||| ||||||||||||||| | |||||| |||| || |||||   || |   |                                                                                    
--------------------------------GTCATGCACATAGCAGCAGCCACAGAGATCAATTCAAGGTTTGTCCCAAGCTTGCAACAGTTGCATAAGTCACTTGATTCAAAGgtatttttttttgtctcttgtttcccaacattaaaatccattcttgtcttgtgccttttatatttatgggtgcgtgtttcacctattggcttaattccaa