1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGTTCCAGCGGCATGTGGAGCCACAGGTTACGACTGATGAGTATGAGCGGGGATCATATGTATACTTTGATTTCCATGTCACCGAGGATGGCTCAGGATGgtatgtgggcctttcctttgagcattgttataccgtagtgcattttgtgtttacttttttcttgtcctgttcttttatgctgttactgttagctaacctgttgctaacactgcttgcag
species | Zea mays |
transcript | GRMZM2G340749_T02 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GGATCATATGTATACTTTGATTTCCATGTCACCGAGGATGGCTCAGGATG GTGCCAAAGAATCAAGAATGACTTCACATTCGAGTACAACTTCTTGGAGGAEST: gi|50331351|gb|CO526477.1|CO526477
genomic: GGATCATATGTATACTTTGATTTCCATGTCACCGAGGATGGCTCAGGATGgtatgtgggc ... ctgcttgcagGTGCCAAAGAATCAAGAATGACTTCACATTCGAGTACAACTTCTTGGAGGA
EST: GGATCATATGTATACTTTGATTTCCATGTCACCGAGGATGGCTCAGGATG GTGCCAAAGAATCAAGAATGACTTCACATTCGAGTACAACTTCTTGGAGGAEST: gi|67024274|gb|CO453023.1|CO453023
genomic: GGATCATATGTATACTTTGATTTCCATGTCACCGAGGATGGCTCAGGATGgtatgtgggc ... ctgcttgcagGTGCCAAAGAATCAAGAATGACTTCACATTCGAGTACAACTTCTTGGAGGA
EST: GGATCATATGTATACTTTGATTTCCATGTCACCGAGGATGGCTCAGGATG GTGCCAAAGAATCAAGAATGACTTCACATTCGAGTACAACTTCTTGGAGGAEST: gi|18175970|gb|BM351092.1|BM351092
genomic: GGATCATATGTATACTTTGATTTCCATGTCACCGAGGATGGCTCAGGATGgtatgtgggc ... ctgcttgcagGTGCCAAAGAATCAAGAATGACTTCACATTCGAGTACAACTTCTTGGAGGA
EST: GGATCATATGTATACTTTGATTTCCATGTCACCGAGGATGGCTCAGGATG GTGCCAAAGAATCAAGAATGACTTCACATTCGAGTACAACTTCTTGGAGGAEST: gi|17931224|gb|BM268184.1|BM268184
genomic: GGATCATATGTATACTTTGATTTCCATGTCACCGAGGATGGCTCAGGATGgtatgtgggc ... ctgcttgcagGTGCCAAAGAATCAAGAATGACTTCACATTCGAGTACAACTTCTTGGAGGA
EST: GGATCATATGTATACTTTGATTTCCATGTCACCGAGGATGGCTCAGGATG GTGCCAAAAAATCAAGAATGACTTCACATTCGAGTACAACTTCTTGGAGGAEST: gi|31359147|gb|CD443504.1|CD443504
genomic: GGATCATATGTATACTTTGATTTCCATGTCACCGAGGATGGCTCAGGATGgtatgtgggc ... ctgcttgcagGTGCCAAAGAATCAAGAATGACTTCACATTCGAGTACAACTTCTTGGAGGA
EST: GGATCATATGTATACTTTGATTTCCATGTCACCGAGGATGGCTCAGGATG GTGCCAAAGAATCAAGAATGACTTCACATTCGAGTACAACTTCTTGGAGGAEST: gi|37378184|gb|CF625760.1|CF625760
genomic: GGATCATATGTATACTTTGATTTCCATGTCACCGAGGATGGCTCAGGATGgtatgtgggc ... ctgcttgcagGTGCCAAAGAATCAAGAATGACTTCACATTCGAGTACAACTTCTTGGAGGA
EST: GGATCATATGTATACTTTGATTTCCATGTCACCGAGGATGGCTCAGGATG GTGCCAAAGAATCAAGAATGACTTCACATTCGAGTACAACTTCTTGGAGGAEST: gi|213169625|gb|FM185632.1|FM185632
genomic: GGATCATATGTATACTTTGATTTCCATGTCACCGAGGATGGCTCAGGATGgtatgtgggc ... ctgcttgcagGTGCCAAAGAATCAAGAATGACTTCACATTCGAGTACAACTTCTTGGAGGA
EST: GGATCATATGTATACTTTGATTTCCATGTCACCGAGGATGGCTCAGGATG GTGCCAAAGAATCAAGAATGACTTCACATTCGAGTACAACTTCTTGGAGGAEST: gi|44901171|gb|CK827716.1|CK827716
genomic: GGATCATATGTATACTTTGATTTCCATGTCACCGAGGATGGCTCAGGATGgtatgtgggc ... ctgcttgcagGTGCCAAAGAATCAAGAATGACTTCACATTCGAGTACAACTTCTTGGAGGA
EST: GGATCATATGTATACTTTGATTTCCATGTCACCGAGGATGGCTCAGGATG GTGCCAAAGAATCAAGAATGACTTCACATTCGAGTACAACTTCTTGGAGGA
genomic: GGATCATATGTATACTTTGATTTCCATGTCACCGAGGATGGCTCAGGATGgtatgtgggc ... ctgcttgcagGTGCCAAAGAATCAAGAATGACTTCACATTCGAGTACAACTTCTTGGAGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTTCCAGCGGCATGTGGAGCCACAGGTTACGACTGATGAGTATGAGCGGGGATCATATGTATACTTTGATTTCCATGTCACCGAGGATGGCTCAGGATGgtatgtgggcctttcctttgagcattgttataccgtagtgcattttgtgtttacttttttcttgtcctgttcttttatgctgttactgttagctaacctgttgctaacactgcttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG