1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AGGCCTTGTACAGAAGGGCACAGGCACACATGCATCTTGTTGATCTTGATTTGGCAGAGGCAGATATCAAGAAAGCTCTAGAAATAGATCCTGACAACAGgtaatgctttgttggtactgcttacttgattaaattacagatcccacaccccagacatggtaatatgtagtactgaagttggcttaatgaaaatcctctg...
species | Zea mays |
transcript | GRMZM2G336858_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TGGCAGAGGCAGATATCAAGAAAGCTCTAGAAATAGATCCTGCCANCAG GGATGTGAAGATGGGGTACAAGAGGCTAAAGGAGAAGGTCAAGGAGTACAAEST: gi|211411217|gb|FL076934.1|FL076934
genomic: TGGCAGAGGCAGATATCAAGAAAGCTCTAGAAATAGATCCTGACAACAGgtaatgcttt ... tcttcatcagGGATGTGAAGATGGGGTACAAGAGGCTAAAGGAGAAGGTCAAGGAGTACAA
EST: TTGGCAGAGGCAGATATCAAGAAAGCTCTAGAAATAGATCCTGACAACAG GGATGTGAAGATGGGGTACAAGAGGCTAAAGGAGAAGGTCAAGGAGTACAAEST: gi|211411218|gb|FL076935.1|FL076935
genomic: TTGGCAGAGGCAGATATCAAGAAAGCTCTAGAAATAGATCCTGACAACAGgtaatgcttt ... tcttcatcagGGATGTGAAGATGGGGTACAAGAGGCTAAAGGAGAAGGTCAAGGAGTACAA
EST: TTGGCAGAGGCAGATATCAAGAAAGCTCTAGAAATAGATCCTGACAACAG GGATGTGAAGATGGGGTACAAGAGGCTAAAGGAGAAGGTCAAGGAGTACAAEST: gi|60343806|gb|DN210779.1|DN210779
genomic: TTGGCAGAGGCAGATATCAAGAAAGCTCTAGAAATAGATCCTGACAACAGgtaatgcttt ... tcttcatcagGGATGTGAAGATGGGGTACAAGAGGCTAAAGGAGAAGGTCAAGGAGTACAA
EST: TTGGCAGAGGCAGATATCAAGAAAGCTCTAGAAATAGATCCTGACAACAG GGATGTGAAGATGGGGTACAAGAGGCTAAAGGAGAAGGTCAAGGAGTACAAEST: gi|67022530|gb|CO451279.1|CO451279
genomic: TTGGCAGAGGCAGATATCAAGAAAGCTCTAGAAATAGATCCTGACAACAGgtaatgcttt ... tcttcatcagGGATGTGAAGATGGGGTACAAGAGGCTAAAGGAGAAGGTCAAGGAGTACAA
EST: TTGGCAGAGGCAGATATCAAGAAAGCTCTAGAAATAGATCCTGACAACAG GGATGTGAAGATGGGGTACAAGAGGCTAAAGGAGAAGGTCAAGGAGTACAAEST: gi|211411221|gb|FL076938.1|FL076938
genomic: TTGGCAGAGGCAGATATCAAGAAAGCTCTAGAAATAGATCCTGACAACAGgtaatgcttt ... tcttcatcagGGATGTGAAGATGGGGTACAAGAGGCTAAAGGAGAAGGTCAAGGAGTACAA
EST: TTGGCAGAGGCAGATATCAAGAAAGCTCTAGAAATAGATCCTGACAACAG GGATGTGAAGATGGGGTACAAGAGGCTAAAGGAGAAGGTCAAGGAGTACAAEST: gi|211411222|gb|FL076939.1|FL076939
genomic: TTGGCAGAGGCAGATATCAAGAAAGCTCTAGAAATAGATCCTGACAACAGgtaatgcttt ... tcttcatcagGGATGTGAAGATGGGGTACAAGAGGCTAAAGGAGAAGGTCAAGGAGTACAA
EST: TTGGCAGAGGCAGATATCAAGAAAGCTCTAGAAATAGATCCTGACAACAG GGATGTGAAGATGGGGTACAAGAGGCTAAAGGAGAAGGTCAAGGAGTACAAEST: gi|60350756|gb|DN217729.1|DN217729
genomic: TTGGCAGAGGCAGATATCAAGAAAGCTCTAGAAATAGATCCTGACAACAGgtaatgcttt ... tcttcatcagGGATGTGAAGATGGGGTACAAGAGGCTAAAGGAGAAGGTCAAGGAGTACAA
EST: TTGGCAGAGGCAGATATCAAGAAAGCTCTAGAAATAGATCCTGACAACAG GGATGTGAAGATGGGGTACAAGAGGCTAAAGGAGAAGGTCAAGGAGTACAAEST: gi|149060210|gb|EE157184.2|EE157184
genomic: TTGGCAGAGGCAGATATCAAGAAAGCTCTAGAAATAGATCCTGACAACAGgtaatgcttt ... tcttcatcagGGATGTGAAGATGGGGTACAAGAGGCTAAAGGAGAAGGTCAAGGAGTACAA
EST: TTGGCAGAGGCAGATATCAAGAAAGCTCTAGAAATAGATCCTGCCACCAG GGATGTGAAGATGGGGTACAAGAGGCTAAAGGAGAAGGTCAAGGAGTACAAEST: gi|211411220|gb|FL076937.1|FL076937
genomic: TTGGCAGAGGCAGATATCAAGAAAGCTCTAGAAATAGATCCTGACAACAGgtaatgcttt ... tcttcatcagGGATGTGAAGATGGGGTACAAGAGGCTAAAGGAGAAGGTCAAGGAGTACAA
EST: TTGGCAGAGGCAGATATCAAGAAAGCTCTAGAAATAGATCCTGACAACAG GGATGTGAAGATGGGGTACAAGAGGCTAAAGGAGAAGGTCAAGGAGTACAAEST: gi|5791270|gb|AI978062.1|AI978062
genomic: TTGGCAGAGGCAGATATCAAGAAAGCTCTAGAAATAGATCCTGACAACAGgtaatgcttt ... tcttcatcagGGATGTGAAGATGGGGTACAAGAGGCTAAAGGAGAAGGTCAAGGAGTACAA
EST: TGGCA-AGGCAGATATCAAGAAAGCTCTAGAAATAGATCCTGACAACAG GGATGTGAAGATGGGGTACAAGAGGCTAAAGGAGAAGGTCAAGGAGTACAAEST: gi|18383581|gb|BM416781.1|BM416781
genomic: TGGCAGAGGCAGATATCAAGAAAGCTCTAGAAATAGATCCTGACAACAGgtaatgcttt ... tcttcatcagGGATGTGAAGATGGGGTACAAGAGGCTAAAGGAGAAGGTCAAGGAGTACAA
EST: TTGGCAGAGGCAGATATCAAGAAAGCTCTAGAAATAGATCCTGACAACAG GGATGTGAAGATGGGGTACAAGAGGCTAAAGGAGAAGGTCAAGGAGTACAAEST: gi|60400590|gb|DN233397.1|DN233397
genomic: TTGGCAGAGGCAGATATCAAGAAAGCTCTAGAAATAGATCCTGACAACAGgtaatgcttt ... tcttcatcagGGATGTGAAGATGGGGTACAAGAGGCTAAAGGAGAAGGTCAAGGAGTACAA
EST: TTGGCAGAGGCAGATATCAAGAAAGCTCTAGAAATAGATCCTGACAACAG GGATGTGAAGATGGGGTACAAGAGGCTAAAGGAGAAGGTCAAGGAGTACAAEST: gi|110541157|gb|EE045077.1|EE045077
genomic: TTGGCAGAGGCAGATATCAAGAAAGCTCTAGAAATAGATCCTGACAACAGgtaatgcttt ... tcttcatcagGGATGTGAAGATGGGGTACAAGAGGCTAAAGGAGAAGGTCAAGGAGTACAA
EST: TTGGCAGAGGCAGATATCAAGAAAGCTCTAGAAATAGATCCTGACAACAG GGATGTGAAGATGGGGTACAAGAGGCTAAAGGAGAAGGTCAAGGAGTACAAEST: gi|14191396|gb|BG833626.1|BG833626
genomic: TTGGCAGAGGCAGATATCAAGAAAGCTCTAGAAATAGATCCTGACAACAGgtaatgcttt ... tcttcatcagGGATGTGAAGATGGGGTACAAGAGGCTAAAGGAGAAGGTCAAGGAGTACAA
EST: TTGGCAGAGGCAGATATCAAGAAAGCTCTAGAAATAGATCCTGACAACAG GGATGTGAAGATGGGGTACA
genomic: TTGGCAGAGGCAGATATCAAGAAAGCTCTAGAAATAGATCCTGACAACAGgtaatgcttt ... tcttcatcagGGATGTGAAGATGGGGTACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGCCTTGTACAGAAGGGCACAGGCACACATGCATCTTGTTGATCTTGATTTGGCAGAGGCAGATATCAAGAAAGCTCTAGAAATAGATCCTGACAACAGgtaatgctttgttggtactgcttacttgattaaattacagatcccacaccccagacatggtaatatgtagtactgaagttggcttaatgaaaatcctctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA