Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATATTTGCTGTGCAACCACGTGGCCCCGTTCGATCCGTCGGCCTCCGACATGCAACAACACGTAGACgtaggtgtatggtgtctttaataattatggttggaacacgtaattacttccgttgattcggttcagcgagtacgtaaccgtaattagtagagtacgtaattaacaattcaacgtggaggatgatcatgggtccag

Basic information

species Zea mays
transcript GRMZM2G334225_T01
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71771389|gb|DR969326.1|DR969326
EST:     ACGTGGCCCCGTTCGATCCGTCGGCCTCCGACATGCAACAACACGTAGAC                         ATGTTCGCCCTGCCGCCGGCGCCGCCTCACCAACAGGAGCAACAAGGGGAC
genomic: ACGTGGCCCCGTTCGATCCGTCGGCCTCCGACATGCAACAACACGTAGACgtaggtgtat ... atgggtccagATGTTCGCCCTGCCGCCGGCGCCGCCTCACCAACAGGAGCAACAAGGGGAC
EST: gi|74233593|gb|DT641507.1|DT641507
EST:     ACGTGGCCCCGTTCGATCCGTCGGCCTCCGACATGCAACAACACGTAGAC                         ATGTTCGCCCTGCCGCCGGCGCCGCCTCACCAACAGGAGCAACAAGGGGAC
genomic: ACGTGGCCCCGTTCGATCCGTCGGCCTCCGACATGCAACAACACGTAGACgtaggtgtat ... atgggtccagATGTTCGCCCTGCCGCCGGCGCCGCCTCACCAACAGGAGCAACAAGGGGAC
EST: gi|74233594|gb|DT641508.1|DT641508
EST:     ACGTGGCCCCGTTCGATCCGTCGGCCTCCGACATGCAACAACACGTAGAC                         ATGTTCGCCCTGCCGCCGGCGCCGCCTCACCAACAGGAGCAACAAGGGGAC
genomic: ACGTGGCCCCGTTCGATCCGTCGGCCTCCGACATGCAACAACACGTAGACgtaggtgtat ... atgggtccagATGTTCGCCCTGCCGCCGGCGCCGCCTCACCAACAGGAGCAACAAGGGGAC
EST: gi|50333189|gb|CO528315.1|CO528315
EST:     ACGTGGCCCCGTTCGATCCGTCGGCCTCCGACATGCAACAACACGTAGAC                         ATGTTCGCCCTGCCGCCGGCGCCGCCTCACCAACAGGAGCAACAAGGGGAC
genomic: ACGTGGCCCCGTTCGATCCGTCGGCCTCCGACATGCAACAACACGTAGACgtaggtgtat ... atgggtccagATGTTCGCCCTGCCGCCGGCGCCGCCTCACCAACAGGAGCAACAAGGGGAC