ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq

Sequence

atgc intronic sequence ATGC exonic sequence

GTTGCGACTGACAAATGTATCATGGCATTCCTCTTCCTGATCGTTTTGGGTGTGATTGCTATCATTGTTGTCAAGgtatgtataatatgtttgtcatcagcgtgcagaagaataccttcagttcaacattcttctaggagaactcgtgtcatctccgtatattattctacaacaaatgtgagacgaatgaaaagcctaactacatattttaattcttgcag

Basic information

species	Zea mays
transcript	GRMZM2G330650_T02
intron #	8
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G330650_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os03g25390.1 (Oryza sativa), 5'ss of exon 9

GTTGCGACTGACAAATGTATCATGGCATTCCTCTTCCTGATCGTTTTGGGTGTGATTGCTATCATTGTTGTCAAGgtatgtataatatgtttgtcatcagcgtgcagaagaataccttcagttcaacattcttctaggagaactcgtgtcatctccgtatattattctacaacaaatgtgagacgaatgaaaagcctaactacatattttaattcttgcag
||||| ||||||||||| || |||||||| || || ||||| ||||  ||||||||||| || |||||||| |||||||||     | |||| |  ||   || |       | || ||   | |  ||| |    |||  |  |     | | |   |    |||  |      |||  | |                                      
GTTGCAACTGACAAATGCATTATGGCATTGCTTTTTCTGATTGTTTGTGGTGTGATTGCAATTATTGTTGTTAAGgtatgttcttcaggttttt--tctatgtac-------ttccatctcctgaggattatgagtggattatccaatcaaacacacaactaaatttcattggtgatgaaaaat-------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|21810005|gb|BQ668323.1|BQ668323

EST:     CATTCCTCTTTCTGATCGTTTTGGGTGTGATTGCTATCATTGTTGTTAAG                         ATCGTCCATCCGAATAACAAAAACATTCGAGACATTCCAGGGCTGGCCCCG
genomic: CATTCCTCTTCCTGATCGTTTTGGGTGTGATTGCTATCATTGTTGTCAAGgtatgtataa ... attcttgcagATCGTCCATCCGAATAACAAAAACATTCGAGACATTCCAGGGCTGGCCCCG

EST: gi|148991480|gb|EE032993.2|EE032993

EST:     CATTCCTCTTCCTGATCGTTTTGGGTGTGATTGCTATCATTGTTGTCAAG                         ATCGTCCATCCGAATAACAAAAACATTCGAGACATTCCAGGGCTGGCCCCG
genomic: CATTCCTCTTCCTGATCGTTTTGGGTGTGATTGCTATCATTGTTGTCAAGgtatgtataa ... attcttgcagATCGTCCATCCGAATAACAAAAACATTCGAGACATTCCAGGGCTGGCCCCG

EST: gi|60336613|gb|DN203586.1|DN203586

EST:     CATTCCTCTTCCTGATCGTTTTGGGCGTGATTGCTATCATTGTTGTCAAG                         ATCGTCCATCCGAATAACAAAAACATTCGAGACATTCCAGGGCTGGCCCCG
genomic: CATTCCTCTTCCTGATCGTTTTGGGTGTGATTGCTATCATTGTTGTCAAGgtatgtataa ... attcttgcagATCGTCCATCCGAATAACAAAAACATTCGAGACATTCCAGGGCTGGCCCCG

EST: gi|86468475|gb|DY234845.1|DY234845

EST:     CATTCCTTTTCCTGATCGTTTTGGGTGTGATTGCTATCATTGTTGTCAAG                         ATCGTCCATCCGAATAACAAAAACATTCGAGACATTCCAGGGCTGGCCCCG
genomic: CATTCCTCTTCCTGATCGTTTTGGGTGTGATTGCTATCATTGTTGTCAAGgtatgtataa ... attcttgcagATCGTCCATCCGAATAACAAAAACATTCGAGACATTCCAGGGCTGGCCCCG

EST: gi|33467215|gb|CF244264.1|CF244264

EST:     CATTCCTCTTCCTGATCGTTTTGGGTGTGATTGCTATCATTGTTGTCAAG                         ATCGTCCATCCGAATAACAAAAACATTCGAGACATTCCAGGGCTGGCCCCG
genomic: CATTCCTCTTCCTGATCGTTTTGGGTGTGATTGCTATCATTGTTGTCAAGgtatgtataa ... attcttgcagATCGTCCATCCGAATAACAAAAACATTCGAGACATTCCAGGGCTGGCCCCG

EST: gi|87157738|gb|DY402527.1|DY402527

EST:     CATTCCTCTTTCTGATCGTTTTGGGTGTGATTGCTATCATTGTTGTTAAG                         ATCGTCCATCCGAATAACAAAAACATTCGAGACATTCCAGGGCTGGCCCCG
genomic: CATTCCTCTTCCTGATCGTTTTGGGTGTGATTGCTATCATTGTTGTCAAGgtatgtataa ... attcttgcagATCGTCCATCCGAATAACAAAAACATTCGAGACATTCCAGGGCTGGCCCCG

EST: gi|60338704|gb|DN205677.1|DN205677

EST:     CATTCCTCTTCCTGATCGTTTTGGGTGTGATTGCTATCATTGTTGTCAAG                         ATCGTCCATCCGAATAACAAAAACATTCGAGACATTCCAGGGCTGGCCCCG
genomic: CATTCCTCTTCCTGATCGTTTTGGGTGTGATTGCTATCATTGTTGTCAAGgtatgtataa ... attcttgcagATCGTCCATCCGAATAACAAAAACATTCGAGACATTCCAGGGCTGGCCCCG

EST: gi|110510919|gb|EE019261.1|EE019261

EST:     CATTCCTCTTCCTGATCGTTTTGGGTGTGATTGCTATCATTGTTGTCAAG                         ATCGTCCATCCGAATAACAAAAACATTCGAGACATTCCAGGGCTGGCCCCG
genomic: CATTCCTCTTCCTGATCGTTTTGGGTGTGATTGCTATCATTGTTGTCAAGgtatgtataa ... attcttgcagATCGTCCATCCGAATAACAAAAACATTCGAGACATTCCAGGGCTGGCCCCG

EST: gi|7135591|gb|AW498164.1|AW498164

EST:     CATTCCTCTTTCTGATCGTTTTGGGTGTGATTGCTATCATTGTTGTTAAG                         ATCGTCCATCCGAATAACAAAAACATTCGAGACATTCCAGGGCTGGCCCCG
genomic: CATTCCTCTTCCTGATCGTTTTGGGTGTGATTGCTATCATTGTTGTCAAGgtatgtataa ... attcttgcagATCGTCCATCCGAATAACAAAAACATTCGAGACATTCCAGGGCTGGCCCCG

EST: gi|18166041|gb|BM335880.1|BM335880

EST:     CATTCCTCTTCCTGATCGTTTTGGGTGTGATTGCTATCATTGTTGTCAAG                         ATCGTCCATCCGAATAACAAAAACATTCGAGACATTCCAGGGCTGGCCCCG
genomic: CATTCCTCTTCCTGATCGTTTTGGGTGTGATTGCTATCATTGTTGTCAAGgtatgtataa ... attcttgcagATCGTCCATCCGAATAACAAAAACATTCGAGACATTCCAGGGCTGGCCCCG

EST: gi|149097830|gb|EE183757.2|EE183757

EST:     CATTCCTCTTCCTGATCGTTTTGGGTGTGATTGCTATCATTGTTGTCAAG                         ATCGTCCATCCGAATAACAAAAACATTCGAGACATTCCAGGGCTGGCCCCG
genomic: CATTCCTCTTCCTGATCGTTTTGGGTGTGATTGCTATCATTGTTGTCAAGgtatgtataa ... attcttgcagATCGTCCATCCGAATAACAAAAACATTCGAGACATTCCAGGGCTGGCCCCG

EST: gi|50334133|gb|CO529259.1|CO529259

EST:     CATTCCTCTTCCTGATCGTTTTGGGTGTGATTGCTATCATTGTTGTCAAG                         ATCGTCCATCCGAATAACAAAAACATTCGAGACATTCCAGGGCTGGCCCCG
genomic: CATTCCTCTTCCTGATCGTTTTGGGTGTGATTGCTATCATTGTTGTCAAGgtatgtataa ... attcttgcagATCGTCCATCCGAATAACAAAAACATTCGAGACATTCCAGGGCTGGCCCCG

EST: gi|89754547|gb|DY685289.1|DY685289

EST:     CATTCCTCTTCCTGATCGTTTTGGGTGTGATTGCTATCATTGTTGTCAAG                         ATCGTCCATCCGAATAACAAAAACATTCGAGACATTCCAGGGCTGGCCCCG
genomic: CATTCCTCTTCCTGATCGTTTTGGGTGTGATTGCTATCATTGTTGTCAAGgtatgtataa ... attcttgcagATCGTCCATCCGAATAACAAAAACATTCGAGACATTCCAGGGCTGGCCCCG

EST: gi|86468443|gb|DY234813.1|DY234813

EST:     CATTCCTTTTCCTGATCGTTTTGGGTGTGATTGCTATCATTGTTGTCAAG                         ATCGTCCATCCGAATAACAAAAACATTCGAGACATTCCAGGGCTGGCCCCG
genomic: CATTCCTCTTCCTGATCGTTTTGGGTGTGATTGCTATCATTGTTGTCAAGgtatgtataa ... attcttgcagATCGTCCATCCGAATAACAAAAACATTCGAGACATTCCAGGGCTGGCCCCG

EST: gi|76286033|gb|DV025601.1|DV025601

EST:     CATTCCTCTTCCTGATCGTTTTGGGTGTGATTGCTATCATTGTTGTCAAG                         ATCGTCCATCCGAATAACAAAAACATTCGAGACATTCCAGGGCTGGCCCCG
genomic: CATTCCTCTTCCTGATCGTTTTGGGTGTGATTGCTATCATTGTTGTCAAGgtatgtataa ... attcttgcagATCGTCCATCCGAATAACAAAAACATTCGAGACATTCCAGGGCTGGCCCCG

EST: gi|71306394|gb|DR789339.1|DR789339

EST:     CATTCCTCTTCCTGATCGTTTTGGGTGTGATTGCTATCATTGTTGTCAAG                         ATCGTCCATCCGAATAACAAAAACATTCGAGACATTCCAGGGCTGGCCCCG
genomic: CATTCCTCTTCCTGATCGTTTTGGGTGTGATTGCTATCATTGTTGTCAAGgtatgtataa ... attcttgcagATCGTCCATCCGAATAACAAAAACATTCGAGACATTCCAGGGCTGGCCCCG

EST: gi|76913444|gb|DV165140.1|DV165140

EST:     CATTCCTCTTCCTGATCGTTTTGGGTGTGATTGCTATCATTGTTGTCAAG                         ATCGTCCATCCGAATAACAAAAACATTCGAGACATTCCAGGGCTGGCCCCG
genomic: CATTCCTCTTCCTGATCGTTTTGGGTGTGATTGCTATCATTGTTGTCAAGgtatgtataa ... attcttgcagATCGTCCATCCGAATAACAAAAACATTCGAGACATTCCAGGGCTGGCCCCG

EST: gi|71329982|gb|DR801727.1|DR801727

EST:     TCCCTTCTTCCTGATCGTTTTTGGGTGTGATTGCTATCATTGTTGTCAAG                         ATCGTCCATCCGAATAACAAAAACATTCGAGACATTCCAGGGCTGGCCCCG
genomic: TCC-T-CTTCCTGATCGTTTT-GGGTGTGATTGCTATCATTGTTGTCAAGgtatgtataa ... attcttgcagATCGTCCATCCGAATAACAAAAACATTCGAGACATTCCAGGGCTGGCCCCG

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 94

GTTGCGACTGACAAATGTATCATGGCATTCCTCTTCCTGATCGTTTTGGGTGTGATTGCTATCATTGTTGTCAAGgtatgtataa ... attcttgcagATCGTCCATCCGAATAACAAAAACATTCGAGACATTCCAGGGCTGGCCCCGCCTGCTCAAAACTATCAGATTCACAACAGGAGATTGTTGTGGGCAGAAG

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 133

Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 133