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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTGATCTACTTGGTTCTGTAGATGAGATTTTCTATGATATCTATGACAGATATGAACCAGTGAATGAACCATCTCTTGATAATTGCTTTGTCTCGACAgtaagatttgcagtttatgttagcagaatgaacatttaacttcactgtttaaacattctactaaatttttctggctgtttcaccatgcag

Basic information

species Zea mays
transcript GRMZM2G318942_T01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G318942_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os05g23860.1 (Oryza sativa), 5'ss of exon 11
AATTGATCTACTTGGTTCTGTAGATGAGATTTTCTATGATATCTATGACAGATATGAACCAGTGAATGAACCATCTCTTGATAATTGCTTTGTCTCGACAgtaagatttgcagtttatg-ttagcagaatgaacatttaacttcactgtttaaacattctactaaatttttctggctgtttcaccatgcag
||||||||||||||||   ||||||||| | || | |||||||||||| ||||| ||||| |||||||||||||||||||||||||| |||||||| || ||||| |||||| | | || ||     ||||| |||| |  || | ||| || ||    |   | || |||||||      | || |||||
AATTGATCTACTTGGTCAAGTAGATGAGCTATTTTTTGATATCTATGATAGATACGAACCTGTGAATGAACCATCTCTTGATAATTGTTTTGTCTCAACTgtaagttttgcaatatctgatttttgaaatgagcattaagtttgattgtctagac----tgtaacatatttctggtccacactccctgcag

upper sequence: GRMZM2G318942_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os05g34540.1 (Oryza sativa), 5'ss of exon 11
AATTGATCTACTTGGTTCTGTAGATGAGATTTTCTATGATATCTATGACAGATATGAACCAGTGAATGAACCATCTCTTGATAATTGCTTTGTCTCGACAgtaagatttgcagtttatgttagcagaat-gaacatttaacttcactg--tttaaacattctacta--aatttttctggctgtt--tcaccatgcag
 |||||||||||||||   ||||||||| | |||| |||||||||||| ||||||||||| |||||||| |||||||||||||| || |||||||| || ||||| | | | || |||| |     | | ||||||| |  ||   ||  ||  |  ||  || ||  ||  | ||||| ||||  || |  |||||
GATTGATCTACTTGGTCAAGTAGATGAGCTATTCTTTGATATCTATGATAGATATGAACCCGTGAATGAGCCATCTCTTGATAACTGTTTTGTCTCAACTgtaagttctacggtgtatgattttgcacttgaacattaagtttggttgtgttggagtataatagtataaacatctctggttgttattctctctgcag