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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGATACTTATGTTGAGTTCTTGAAGCTTCGAGGTGTTCCTCTCACAGAAAGGGAATGCCTCGCAAACACTGATGATGTCATACCGCAGgtggattctcttgtacaaataccatttagagatagagaagtaccttaggttttttagtctagataccacttgaaatgccagtgatatcatgctatggtaacgtagaaaggttaccctgcttaggagaccaatttctaattaataactaatatgccactttgtgcttcag

Basic information

species Zea mays
transcript GRMZM2G303752_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G303752_T03 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os01g07080.2 (Oryza sativa), 5'ss of exon 8
GAGGATACTTATGTTGAGTTCTTGAAGCTTCGAGGTGTTCCTCTCACAGAAAGGGAATGCCTCGCAAACACTGATGATGTCATACCGCAGgtggattctcttgtacaaataccatttagagatagagaagtaccttaggttttttagtctagataccacttgaaatgccagtgatatcatgctatggtaacgtagaaaggttaccctgcttaggagaccaatttctaattaataactaatatgccactttgtgcttcag
|| ||||||||||||||||||||||||    ||||||| || ||||| |||||||| ||   | ||||  |||  ||| |  |||| ||||||  ||   |  |           ||| ||||        | |||||||| | |      ||   ||  ||||   ||||  ||    |  | |  | | |   |||  |||   || |||       |||  | |||||   |||  | || |||            
GAAGATACTTATGTTGAGTTCTTGAAGAGGAGAGGTGTACCCCTCACTGAAAGGGAGTGTTCCACAAATGCTGTAGATATTGTACCACAGgtgagtttcttattg----------ttatagat-------catcttaggttgtctgcctgtgaaggcatctgaat--ccagaaatgattttttttcttga-gagaaaaatttag--tgtttaa------aataaccaattacccacttgtctgtcacag----------