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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGCGACAATGAGGTGCAGCGTACAATGTTGGAAATAGTAAACCAGCTTGATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatttttttcccttctactctttctcatgtggttccagatccttttatgtgcttacctcgagctctattctgaagctattatcagaagaaacat...

Basic information

species Zea mays
transcript GRMZM2G181359_T01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G181359_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os02g54340.2 (Oryza sativa), 5'ss of exon 8
GTGGCGACAATGAGGTGCAGCGTACAATGTTGGAAATAGTAAACCAGCTTGATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatttttttcccttctactctttctcatgtggttccagatccttttatgtgcttacctcgagctctattctgaagctattatcagaagaaacat------------------
| || || |||||||| |||||||| ||||||||||| || ||||| || |||||||||||||| || || |||||||| ||||| |||||||| || |||||||  || |  | |  |    || ||| ||       |  | |    |  ||||| | |   | | | | |            |   |     | ||                   
GGGGTGATAATGAGGTTCAGCGTACCATGTTGGAAATTGTGAACCAACTCGATGGGTTTGATGCGAGGGGAAACATCAAGGTTCTGATGGCCACAAACAGgtattgcatatcatactgtgtagctatttatc-------tttaaacatctgcatgtgttcaggactatcgccacatgagtagagctgagaagctgaccacattttcttgttttgtcag

upper sequence: GRMZM2G181359_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA07G05220.1 (Glycine max), 5'ss of exon 8
GTGGCGACAATGAGGTGCAGCGTACAATGTTGGAAATAGTAAACCAGCTTGATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatttttttcccttctac---tctttctcatgtggttccagatccttttatgtgcttacctcgagctctattctgaagctattatcagaagaaacat
|||| ||||||||||| ||||| || ||| | ||||| || || ||||||||||||||||||||  | || |||||||||||| | ||||| ||||||||||   ||  |||| |        |   ||| |   ||| |  ||         | |||     |   | |   |  ||   ||   ||| |     | ||   
GTGGTGACAATGAGGTTCAGCGCACCATGCTTGAAATTGTGAATCAGCTTGATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAATAGgttggttgattttattgtgagagcatgtctctgcaatgcgagtctttccataatgatg-atgcattccaaatgccctttcaaattcattttttcttgtaag--

upper sequence: GRMZM2G181359_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA03G42370.2 (Glycine max), 5'ss of exon 8
GTGGCGACAATGAGGTGCAGCGTACAATGTTGGAAATAGTAAACCAGCTTGATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatttttttcccttctactctttctcatgtggttccagatccttttatgtgcttacctcgagctctattctgaagctattatcagaagaaacat--
|||| || |||||||| ||||| || ||| | ||||| || || ||||||||||||||||||||  | || |||||||||||  | ||||| ||||| |||| || |  |||   |  || ||   |||    | | ||||    ||  |||   |||  |  |  || || |    | | ||    | ||   |   |   
GTGGTGATAATGAGGTTCAGCGCACTATGCTTGAAATTGTGAATCAGCTTGATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAGgttttctgatttgg-ctattatatgattttcactttagttcatactcagttttactgcagatgttaag-tcaagaaagtatctcactttagttcatcaagtg

upper sequence: GRMZM2G181359_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA16G01810.1 (Glycine max), 5'ss of exon 8
GTGGCGACAATGAGGTGCAGCGTACAATGTTGGAAATAGTAAACCAGCTTGATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatttttttcccttctactctttctcatgtggttccagatccttttatgtgcttacctcgagctctattctgaagctattatcagaagaaacat---
|||| ||||||||||| ||||| || ||| | ||||| || || ||||||||||||||||||||  | || |||||||||||| | ||||| ||||| ||||   ||  |||| |   |   |   | ||||     ||    |  ||  || ||   | |    ||  |  ||||  ||     | | | |   ||  |   
GTGGTGACAATGAGGTTCAGCGCACCATGCTTGAAATTGTGAATCAGCTTGATGGGTTTGATGCTCGGGGAAACATCAAAGTTTTGATGGCAACTAACAGgttggttgattttataa-tgaaagcatgtctctaacagtcaacgtgccagttttgccataattatga--tgcattcaaaatgcccttttaaattcaattttcg

upper sequence: GRMZM2G181359_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA19G45140.1 (Glycine max), 5'ss of exon 8
GTGGCGACAATGAGGTGCAGCGTACAATGTTGGAAATAGTAAACCAGCTTGATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtatttt-atttttttcccttctactctttctcatgtggttccagatccttttatgtgcttacctcgagctctattctgaagctattatcagaagaaacat
| || || |||||||| ||||| || ||| | ||||| || || ||||||||||||||||||||  | || |||||||||||  | ||||| ||||| |||| || | ||||   |    | |  |  || |||  |   | || |  |  || |              || |    | |||  | ||||   |   |   
GCGGTGATAATGAGGTTCAGCGCACTATGCTTGAAATTGTGAATCAGCTTGATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAGgttttctgatttggctattatatgatgattttcactttagttcatactcagttttactacagatgttcactgttaagtcaagaaagtatctccaagcatg-

upper sequence: GRMZM2G181359_T01 (Zea mays), 5'ss of exon 8
lower sequence: Vv09s0002g00170.t01 (Vitis vinifera), 5'ss of exon 8
GTGGCGACAATGAGGTGCAGCGTACAATGTTGGAAATAGTAAACCAGCTTGATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatttttttcccttctactctttctcatgtggttccag-atccttttatgtgcttacctcgagctctattctgaagctattatcagaagaaacat
|||| ||||||||||| |||||||| ||| | || || ||||| ||||||||||||||||||||  |||| || ||||||||||| ||||| || |||||||   ||   |   | | ||  | | ||     ||| | |     | |  | |  |   |        |   |||| |     || |   | | || | ||
GTGGGGACAATGAGGTCCAGCGTACCATGCTTGAGATTGTAAATCAGCTTGATGGGTTTGATGCTCGAGGAAATATCAAAGTTCTAATGGCAACAAATAGgttagttggctaccttcattggattattgtctgtgttgctgtgctaccactgttagaaatggttgttggggttatttttctagtaatgcaatatgaca-at

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149004351|gb|EE039049.2|EE039049
EST:     GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAG                         GCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
genomic: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatt ... ttccttccagGCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
EST: gi|32857562|gb|CD997243.1|CD997243
EST:     GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAG                         GCCTGGTACATTGGATCCTGCACTTCAGCGTCCTGGTCGTCTGGACAGAAA
genomic: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatt ... ttccttccagGCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
EST: gi|67019132|gb|CO447881.1|CO447881
EST:     GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAG                         GCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
genomic: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatt ... ttccttccagGCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
EST: gi|148930441|gb|EE284947.2|EE284947
EST:     GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAG                         GCCTGATACAT
genomic: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatt ... ttccttccagGCCTGATACAT
EST: gi|31363534|gb|CD447891.1|CD447891
EST:     GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAG                         GCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
genomic: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatt ... ttccttccagGCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
EST: gi|67021842|gb|CO450591.1|CO450591
EST:     GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAG                         GCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
genomic: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatt ... ttccttccagGCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
EST: gi|6031320|gb|AW076177.1|AW076177
EST:     GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAG                         GCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
genomic: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatt ... ttccttccagGCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
EST: gi|110202151|gb|EC884048.1|EC884048
EST:     AAGAGGGAACATCAAAGTTCTTCATGGCCACTAATAG                         GCCTGATCCATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
genomic: AAGAGGGAACATCAAAGTTC-TCATGGCCACTAATAGgtattttatt ... ttccttccagGCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
EST: gi|148933232|gb|EC876883.2|EC876883
EST:     GATGGGTTTGATGCAAGAGGGAACATCAAAGTTTTCATGGCCACTAATAG                         GCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
genomic: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatt ... ttccttccagGCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
EST: gi|5607920|gb|AI901587.1|AI901587
EST:     TGATGCAAGAGGGAACATCAAAGTTTTCATGGCCCCTAATAG                         GCCTGATACATTGGATCCTGCACTTTTGCGTCCTGGTCGTCTGGACAGAAA
genomic: TGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatt ... ttccttccagGCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
EST: gi|148981607|gb|EE027765.2|EE027765
EST:     GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAG                         GCCTGATACATTGGATCCTGCACTTTTGCGTCCTGGTCGTCTGGACAGAAA
genomic: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatt ... ttccttccagGCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
EST: gi|37375424|gb|CF624148.1|CF624148
EST:     GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAG                         GCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
genomic: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatt ... ttccttccagGCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
EST: gi|60355431|gb|DN222404.1|DN222404
EST:     GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAG                         GCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
genomic: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatt ... ttccttccagGCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
EST: gi|67020716|gb|CO449465.1|CO449465
EST:     GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAG                         GCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
genomic: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatt ... ttccttccagGCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
EST: gi|60399891|gb|DN232701.1|DN232701
EST:     GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAG                         GCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
genomic: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatt ... ttccttccagGCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
EST: gi|211115113|gb|FL138970.1|FL138970
EST:     GATGGGTTTNATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAG                         GCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
genomic: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatt ... ttccttccagGCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
EST: gi|37373749|gb|CF623190.1|CF623190
EST:     GGAACATCAAAGTTCTCATGGCCACTAATAG                         GCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
genomic: GGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatt ... ttccttccagGCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
EST: gi|40334078|gb|CK368148.1|CK368148
EST:     GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAG                         GCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
genomic: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatt ... ttccttccagGCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
EST: gi|60350810|gb|DN217783.1|DN217783
EST:     GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAG                         GCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
genomic: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatt ... ttccttccagGCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
EST: gi|60347007|gb|DN213980.1|DN213980
EST:     GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAG                         GCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
genomic: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatt ... ttccttccagGCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
EST: gi|148928313|gb|EE284946.2|EE284946
EST:     GATGGGTTTGATGCAAGAGGGAACATCAAAGTTTTCATGGCCACTAATAG                         GCCTGATACATTGGATCCTGCACTTTTGCGTCCTGGTCGTCTGGACAGAAA
genomic: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatt ... ttccttccagGCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
EST: gi|149107886|gb|EE292246.2|EE292246
EST:     GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAG                         GCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
genomic: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatt ... ttccttccagGCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
EST: gi|211115112|gb|FL138969.1|FL138969
EST:     GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAG                         GCCTGATACATTGGATCCTGCACTTCTGCGTCCT-GTCGTCTGGACAGAAA
genomic: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatt ... ttccttccagGCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
EST: gi|31910877|gb|CD651643.1|CD651643
EST:     GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAG                         GCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
genomic: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatt ... ttccttccagGCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
EST: gi|211114332|gb|FL138968.1|FL138968
EST:     GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAG                         GCCTGATACATTGGATCCTGCACTTCTGCGTCCT-GTCGTCTGGACAGAAA
genomic: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatt ... ttccttccagGCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
EST: gi|37376686|gb|CF624896.1|CF624896
EST:     GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAG                         GCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA
genomic: GATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatt ... ttccttccagGCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 404

GTGGCGACAATGAGGTGCAGCGTACAATGTTGGAAATAGTAAACCAGCTTGATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatt ... ttccttccagGCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAAGGTAGAATTCGGGCTACCTGACCTGGAGGGCCGTACCCAAATCTTTAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 293

GTGGCGACAATGAGGTGCAGCGTACAATGTTGGAAATAGTAAACCAGCTTGATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatt ... ttccttccagGCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAAGGTAGAATTCGGGCTACCTGACCTGGAGGGCCGTACCCAAATCTTTAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 332

GTGGCGACAATGAGGTGCAGCGTACAATGTTGGAAATAGTAAACCAGCTTGATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatt ... ttccttccagGCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAAGGTAGAATTCGGGCTACCTGACCTGGAGGGCCGTACCCAAATCTTTAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 256

GTGGCGACAATGAGGTGCAGCGTACAATGTTGGAAATAGTAAACCAGCTTGATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatt ... ttccttccagGCCTGATACATTGGATCCTGCACTTCTGCGTCCTGGTCGTCTGGACAGAAAGGTAGAATTCGGGCTACCTGACCTGGAGGGCCGTACCCAAATCTTTAAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGGCGACAATGAGGTGCAGCGTACAATGTTGGAAATAGTAAACCAGCTTGATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatttttttcccttctactctttctcatgtggttccagatccttttatgtgcttacctcgagctctattctgaagctattatcagaagaaacat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaca