1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TCTCGCGGAGAAGAAGACTAACGGCACGAAAGCTGTCCAGGGCGAAAAATGCGATGGCGAGTGCCTCGTCAAGTCGAGTCTCCTCGAAGGAACTTTCGTTgtgagttgctgctgtgcttgtgctccgttccattcatttcattaccttatcagttcttattctgaaaaaaaaacgtgggcttgcattgcatccttgtgttgtattctcacacgcaccctgggtctacttaattactgcgtgcag
species | Zea mays |
transcript | GRMZM2G179737_T02 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GCGATGGCGAGTGCCTCGTCAAGTCGAGTCTCCTCGAAGGAACTTTCGTT GGGATAGTGCTTCTCATCATCCTGATATCAGGACTCATGTGCATGATGGGCEST: gi|101390191|gb|EB817028.1|EB817028
genomic: GCGATGGCGAGTGCCTCGTCAAGTCGAGTCTCCTCGAAGGAACTTTCGTTgtgagttgct ... ctgcgtgcagGGGATAGTGCTTCTCATCATCCTGATATCAGGACTCATGTGCATGATGGGC
EST: GCGATGGCGAGTGCCTCGTCAAGTCGAGTCTCCTCGAAGGAACTTTCGTT GGGATAGTGCTTCTCATCATCCTGATATCAGGACTCATGTGCATGATGGGCEST: gi|60353776|gb|DN220749.1|DN220749
genomic: GCGATGGCGAGTGCCTCGTCAAGTCGAGTCTCCTCGAAGGAACTTTCGTTgtgagttgct ... ctgcgtgcagGGGATAGTGCTTCTCATCATCCTGATATCAGGACTCATGTGCATGATGGGC
EST: GCGATGGCGAGTGCCTCGTCAAATCGAGTCTCCTCGAAGGAACTTTCGTT GGGATAGTGCTTCTCATCATCCTGATATCAGGACTCATGTGCATGATGGGCEST: gi|83279335|gb|DV943343.1|DV943343
genomic: GCGATGGCGAGTGCCTCGTCAAGTCGAGTCTCCTCGAAGGAACTTTCGTTgtgagttgct ... ctgcgtgcagGGGATAGTGCTTCTCATCATCCTGATATCAGGACTCATGTGCATGATGGGC
EST: GCGATGGCGAGTGCCTCGTCAAGTCGAGTCTCCTCGAAGGAACTTTCGTT GGGATAGTGCTTCTCATCATCCTGATATCAGGACTCATGTGCATGATGGGCEST: gi|13178640|gb|BG349898.1|BG349898
genomic: GCGATGGCGAGTGCCTCGTCAAGTCGAGTCTCCTCGAAGGAACTTTCGTTgtgagttgct ... ctgcgtgcagGGGATAGTGCTTCTCATCATCCTGATATCAGGACTCATGTGCATGATGGGC
EST: GCGATGGCGAGTGCCTCGTCAAGTCGAGTCTCCTCGAAGGAACTTTCGTT GGGATAGTGCTTCTCATCATCCTGATATCAGGACTCATGTGCATGATGGGCEST: gi|78087095|gb|DV515488.1|DV515488
genomic: GCGATGGCGAGTGCCTCGTCAAGTCGAGTCTCCTCGAAGGAACTTTCGTTgtgagttgct ... ctgcgtgcagGGGATAGTGCTTCTCATCATCCTGATATCAGGACTCATGTGCATGATGGGC
EST: GCGATGGCGAGTGCCTCGTCAAGTCGAGTCTCCTCGAAGGAACTTTCGTT GGGATAGTGCTTCTCATCATCCTGATATCAGGACTCATGTGCATGATGGGCEST: gi|60398214|gb|DN231030.1|DN231030
genomic: GCGATGGCGAGTGCCTCGTCAAGTCGAGTCTCCTCGAAGGAACTTTCGTTgtgagttgct ... ctgcgtgcagGGGATAGTGCTTCTCATCATCCTGATATCAGGACTCATGTGCATGATGGGC
EST: GCGATGGCGAGTGCCTCGTCAAATCGAGTCTCCTCGAAGGAACTTTCGTT GGGATAGTGCTTCTCATCATCCTGATATCAGGACTCATGTGCATGATGGGCEST: gi|4609573|gb|AI600412.1|AI600412
genomic: GCGATGGCGAGTGCCTCGTCAAGTCGAGTCTCCTCGAAGGAACTTTCGTTgtgagttgct ... ctgcgtgcagGGGATAGTGCTTCTCATCATCCTGATATCAGGACTCATGTGCATGATGGGC
EST: GCGATGGCGAGTGCCTCGTCAAGTCGAGTCTCCTCGAAGGAACTTTCGTT GGGATAGTGCTTCTCATCATCCTGATATCAGGACTCATGTGCATGATGGGCEST: gi|78087096|gb|DV515489.1|DV515489
genomic: GCGATGGCGAGTGCCTCGTCAAGTCGAGTCTCCTCGAAGGAACTTTCGTTgtgagttgct ... ctgcgtgcagGGGATAGTGCTTCTCATCATCCTGATATCAGGACTCATGTGCATGATGGGC
EST: GCGATGGCGAGTGCCTCGTCAAGTCGAGTCTCCTCGAAGGAACTTTCGTT GGGATAGTGCTTCTCATCATCCTGATATCAGGACTCATGTGCATGATGGGCEST: gi|91048207|gb|EB158625.1|EB158625
genomic: GCGATGGCGAGTGCCTCGTCAAGTCGAGTCTCCTCGAAGGAACTTTCGTTgtgagttgct ... ctgcgtgcagGGGATAGTGCTTCTCATCATCCTGATATCAGGACTCATGTGCATGATGGGC
EST: GCGATGGCGAGTGCCTCGTCAAGTCGAGTCTCCTCGAAGGAACTTTCGTT GGGATAGTGCTTCTCATCATCCTGATATCAGGACTCATGTGCATGATGGGCEST: gi|60398588|gb|DN231404.1|DN231404
genomic: GCGATGGCGAGTGCCTCGTCAAGTCGAGTCTCCTCGAAGGAACTTTCGTTgtgagttgct ... ctgcgtgcagGGGATAGTGCTTCTCATCATCCTGATATCAGGACTCATGTGCATGATGGGC
EST: GCGATGGCGAGTGCCTCGTCAAATCGAGTCTCCTCGAAGGAACTTTCGTT GGGATAGTGCTTCTCATCATCCTGATATCAGGACTCATGTGCATGATGGGC
genomic: GCGATGGCGAGTGCCTCGTCAAGTCGAGTCTCCTCGAAGGAACTTTCGTTgtgagttgct ... ctgcgtgcagGGGATAGTGCTTCTCATCATCCTGATATCAGGACTCATGTGCATGATGGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTCGCGGAGAAGAAGACTAACGGCACGAAAGCTGTCCAGGGCGAAAAATGCGATGGCGAGTGCCTCGTCAAGTCGAGTCTCCTCGAAGGAACTTTCGTTgtgagttgctgctgtgcttgtgctccgttccattcatttcattaccttatcagttcttattctgaaaaaaaaacgtgggcttgcattgcatccttgtgttgtattctcacacgcaccctgggtctacttaattactgcgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA