Sequence
atgc intronic sequence ATGC exonic sequenceTAAGGTTTCTCCTTGTGGCCCATCATAGAAATTTTGTTGCAGGATTAACGCTTCATCCAGATCGATCATAAAAGCAAATATAATCTACCTGCATCATAAGgtgtggcgtgttggcttttattggttacaccagtttcacctttggaacttctctatgtaaaatattccagattggtacgttgtaaacaatgtccagtgtg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G179097_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os04g41100.2 (Oryza sativa), 5'ss of exon 8
TAAGGTTTCTCCTTGTGGCCCATCATAGAAATTTTGTTGCAGGATTAACGCTTCATCCAGATCGATCATAAAAGCAAATATAATCTACCTGCATCATAAGgtgtggcgtgttggcttttattggtta-caccagtttcacctttggaacttctctatgtaaaatattccagattggtacgttgtaaacaatgtccagtgtg---------------------------------------------------------------------------------------------
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---------------------------------------------------------------------------CAGTCTAATCTGCCTGCATCGTAAGGTGTGGCATGTTGGCTTTTATTGGTTAACAGCAGTTTCACCTTTGGAACTTCTGTATGTAAAATATTCCAGATTGgtacgttgtaaacaatgttcagtgcgttggatttaaaataagaatattccatcattttttttctatattctcctagtgccttttcttttgatctttccattttgtttgcaagagacaag
upper sequence: GRMZM2G179097_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os04g41100.3 (Oryza sativa), 5'ss of exon 7
----------------------------------------TAAGGTTTCTCCTTGTGGCCCATC-ATAGAAATTTTGTTGCAGGATTAACGCTTCATCCAGATCGATCATAAAAGCAAATATAATCTACCTGCATCATAAGgtgtg--gcgtgttggcttttattggttac-accagtttcacct--ttggaacttctctatgtaaaat--attccagattggtacgttgtaaacaatgtccagtgtg
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CAAGGGAACATTGGCAACCGTGGTCTTTTTGGCTGAGCTATTAGCAACTTGTTTGGGCTCTATTGATCCTGACTGTCATGCATCATTCTGAATCTATG-AGgtcagatacactctgaggtgagatgtgccatggacatgaagtatcacgcatcttggtgtctaccagcaactgatagtgttctttagcaggcatggtgctggtttaagttgataggtacctggcccatcatagaaattttgttgcag-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|31664322|gb|CD573047.1|CD573047EST: CTTCATCCAGATCGATCATAAAAGCAAATATAATCTACCTGCATCATAAG AAGCGCAGGGGAAGGATGCCTTTTGCTTTCATCAGGAAATCAATGGCATTA
genomic: CTTCATCCAGATCGATCATAAAAGCAAATATAATCTACCTGCATCATAAGgtgtggcgtg ... gagacaaaagAAGCGCAGGGGAAGGATGCCTTTTGCTTTCATCAGGAAATCAATGGCATTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TAAGGTTTCTCCTTGTGGCCCATCATAGAAATTTTGTTGCAGGATTAACGCTTCATCCAGATCGATCATAAAAGCAAATATAATCTACCTGCATCATAAGgtgtggcgtgttggcttttattggttacaccagtttcacctttggaacttctctatgtaaaatattccagattggtacgttgtaaacaatgtccagtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA