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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTATTGATTTGGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCGgtaagctcgacgaaagtttagcccatgcatcccataatcccacctgcaccatctggcttctcatgctgtgaacatggagcgctagattaatctgtttctgcggcgtactgaaagacttgttttcgatag

Basic information

species Zea mays
transcript GRMZM2G178958_T01
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76291679|gb|DV031247.1|DV031247
EST:     GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCG                         GAATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCG
genomic: GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCGgtaagctcga ... ttttcgatagGAATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCG
EST: gi|26557845|gb|CA830080.1|CA830080
EST:     GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCG                         GGATTTTCACGCCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCC
genomic: GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCGgtaagctcga ... ttttcgatagGAATTTTCACGCC-GAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCC
EST: gi|22714950|gb|BU197547.1|BU197547
EST:     GCAACGCTGACCGGCGCTTTGCGTTGTCGCACTCGGGCCTAGCATTGCCG                         GGATTTTCACGCCGAGCGA
genomic: GCAACGCTGACCGGCGCTT-GCGTTGTCGCACTCGGGCCTAGCATTGCCGgtaagctcga ... ttttcgatagGAATTTTCACGCCGAGCGA
EST: gi|67022782|gb|CO451531.1|CO451531
EST:     GGCGACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCG                         GGATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCG
genomic: GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCGgtaagctcga ... ttttcgatagGAATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCG
EST: gi|71596246|gb|DR906997.1|DR906997
EST:     GGCGACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCG                         GGATTTTCACGCCGAGCGACGAGCTTGCCAAGGAAGGTTGCCGCTGCTTCC
genomic: GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCGgtaagctcga ... ttttcgatagGAATTTTCACGCCGAGCGACGAGCTTGCCAAGGA-GGTTGCCGCTGCTTCC
EST: gi|149026811|gb|EE046171.2|EE046171
EST:     GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCG                         GAATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCG
genomic: GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCGgtaagctcga ... ttttcgatagGAATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCG
EST: gi|116828289|gb|EC856475.1|EC856475
EST:     GGCGACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCG                         GGATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCG
genomic: GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCGgtaagctcga ... ttttcgatagGAATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCG
EST: gi|211121580|gb|FL034199.1|FL034199
EST:     GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCG                         GGATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCG
genomic: GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCGgtaagctcga ... ttttcgatagGAATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCG
EST: gi|211121581|gb|FL034200.1|FL034200
EST:     GGCAACGCTGACCGGCGCTTGCKTTGTCGCACTCGGGCCTAGCATTGCCG                         GGATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCG
genomic: GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCGgtaagctcga ... ttttcgatagGAATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCG
EST: gi|148948295|gb|EC893812.2|EC893812
EST:     GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCG                         GAATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCG
genomic: GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCGgtaagctcga ... ttttcgatagGAATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCG
EST: gi|76291680|gb|DV031248.1|DV031248
EST:     GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGGCTAGCATTGCCG                         GAATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCT
genomic: GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCGgtaagctcga ... ttttcgatagGAATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCT
EST: gi|71431472|gb|DR812522.1|DR812522
EST:     GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCG                         GAATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCG
genomic: GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCGgtaagctcga ... ttttcgatagGAATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCG
EST: gi|71431471|gb|DR812521.1|DR812521
EST:     GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCG                         GAATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCG
genomic: GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCGgtaagctcga ... ttttcgatagGAATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCG
EST: gi|5343060|gb|AI795470.1|AI795470
EST:     GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCG                         GGATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCG
genomic: GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCGgtaagctcga ... ttttcgatagGAATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCG
EST: gi|78121907|gb|DV540291.1|DV540291
EST:     GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCG                         GAATTTTCACGCCGAGCGACGAGCTTGCCCAGGAGGTTGCCGCTGC
genomic: GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCGgtaagctcga ... ttttcgatagGAATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGC
EST: gi|71435919|gb|DR816969.1|DR816969
EST:     GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCG                         GAATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCG
genomic: GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCGgtaagctcga ... ttttcgatagGAATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCG
EST: gi|110970954|gb|EE190854.1|EE190854
EST:     GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCG                         GAATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCG
genomic: GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCGgtaagctcga ... ttttcgatagGAATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCG
EST: gi|21843359|gb|BQ703940.1|BQ703940
EST:     GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCG                         GGATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCG
genomic: GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCGgtaagctcga ... ttttcgatagGAATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCG
EST: gi|5928970|gb|AW056262.1|AW056262
EST:     GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCG                         GGATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCG
genomic: GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCGgtaagctcga ... ttttcgatagGAATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCG
EST: gi|32907149|gb|CF011962.1|CF011962
EST:     GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCG                         GAATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCG
genomic: GGCAACGCTGACCGGCGCTTGCGTTGTCGCACTCGGGCCTAGCATTGCCGgtaagctcga ... ttttcgatagGAATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCG
EST: gi|76016701|gb|DT943871.1|DT943871
EST:     TAGCATTGCCG                         GAATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCG
genomic: TAGCATTGCCGgtaagctcga ... ttttcgatagGAATTTTCACGCCGAGCGACGAGCTTGCCAAGGAGGTTGCCGCTGCTTCCG