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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTTTCTCCGAGTCTGAAGTCCGCAACTGGTGTTTTCAGATATTTCAGGCTCTTGCATACATGCACCAGAGGGGCTACTTTCATCGTGACCTCAAACCTGgtaggatctcagtgttctcaacaatcagctagatgtttgtttccatagcatataaaaaatggttattttagtcatcaaatgattaccaatttacaactct...

Basic information

species Zea mays
transcript GRMZM2G178822_T03
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G178822_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os02g47220.3 (Oryza sativa), 5'ss of exon 3
CCTTTCTCCGAGTCTGAAGTCCGCAACTGGTGTTTTCAGATATTTCAGGCTCTTGCATACATGCACCAGAGGGGCTACTTTCATCGTGACCTCAAACCTGgtaggatctcagtgttctcaacaatcagctagatgtttgtttccatagcatataaaaaatggttattttagtcatcaaatgat-taccaatttacaactct--
|||||||| ||| | |||||||| || ||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||    |  | |   | || ||  |  | | ||||  | |||   |||  |||    |     | |  |   ||| ||   ||  | ||      
CCTTTCTCAGAGGCAGAAGTCCGGAATTGGTGCTTTCAGATTTTTCAGGCTCTTGCATACATGCACCAGAGGGGTTACTTTCATCGTGACCTGAAACCTGgtaggttctct---tgtttagtcaacatcttcacctatatttctgtggcaatcaaattatgaaactacggatgagtatcagatgtaggtatgcagaatcaggg

upper sequence: GRMZM2G178822_T01 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA09G34610.1 (Glycine max), 5'ss of exon 5
CCTTTCTCCGAGTCTGAAGTCCGCAACTGGTGTTTTCAGATATTTCAGGCTCTTGCATACATGCACCAGAGGGGCTACTTTCATCGTGACCTCAAACCTGgtaggatctcagtgttc--tcaacaatcagctagatgtttgtttccatagcatataaaaaatggttattttagtcatcaaatgattaccaatttacaactct--
|  || || ||  |||||||  | || |||||||||||  | ||||| | |||||| |||||||||||| | || ||||| ||||||||||| || |||||||     |   | ||   || |||||| | |||||  | ||||         |     | || | ||||||   || | ||      | || || |  |    
CTATTTTCTGAAGCTGAAGTTAGAAATTGGTGTTTTCAAGTTTTTCAAGGTCTTGCTTACATGCACCAGCGTGGATACTTCCATCGTGACCTGAAGCCTGgtacttattttttattgcatccacaatctggtagattatggttttg--gatgaactgggagtgttcatttta--tattacatagcatgccatatatattttctt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60345317|gb|DN212290.1|DN212290
EST:     TCTTGCATACATGCACCAGAGGGGCTACTTTCATCGTGACCTCAAACCTG                         AGAATCTGTTGGTTAGCAAAGGTGTCATAAAGCTAGCAGACTTTGGTCTTG
genomic: TCTTGCATACATGCACCAGAGGGGCTACTTTCATCGTGACCTCAAACCTGgtaggatctc ... ggttgtgcagAGAATCTGTTGGTTAGCAAAGGTGTCATAAAGCTAGCAGACTTTGGTCTTG
EST: gi|31361016|gb|CD445373.1|CD445373
EST:     ATCGTGACCTCAAACCTG                         AGAATCTGTTGGTTAGCAAAGGTGTCATAAAGCTAGCAGACTTTGGTCTTG
genomic: ATCGTGACCTCAAACCTGgtaggatctc ... ggttgtgcagAGAATCTGTTGGTTAGCAAAGGTGTCATAAAGCTAGCAGACTTTGGTCTTG
EST: gi|60352824|gb|DN219797.1|DN219797
EST:     TCTTGCATACATGCACCAGAGGGGCTACTTTCATCGTGACCTCAAACCTG                         AGAATCTGTTGGTTAGCAAAGGTGTCATAAAGCTAGCAGACTTTGGTCTTG
genomic: TCTTGCATACATGCACCAGAGGGGCTACTTTCATCGTGACCTCAAACCTGgtaggatctc ... ggttgtgcagAGAATCTGTTGGTTAGCAAAGGTGTCATAAAGCTAGCAGACTTTGGTCTTG