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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATAATGCTAACGACATAAAGGCAAAGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAGgcaagcccgtagctcaaaacaaaccgactgctttctgcaatgttttctgatcccctctgtatcccgttccatccccag

Basic information

species Zea mays
transcript GRMZM2G178415_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G178415_T05 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os03g58040.1 (Oryza sativa), 5'ss of exon 8
GGATAATGCTAACGACATAAAGGCAAAGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAGgcaagccc--------gtagctca-aaacaaa----ccgactgcttt---ctgcaatgttt-tctgatcccctctgtatcccg-ttccatccccag
||| || || || || || || |||||||||||||| |||||||| || ||||||||||| || |||||||| ||||||||| |        ||| ||   | |||||    || || ||       || |   ||| |||||    || | | ||    |||| ||  |||
GGACAACGCAAATGAGATCAAAGCAAAGTACATCATTGAGGCTGCAAACCACCCCACAGACCCTGAGGCAGATGAGgcaagcacatctgacagtatctggcagacaaataccccaacagcaacaaaatgtaccatttgtctgaaatgctttctctctgaattccttctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6851580|gb|AW352590.1|AW352590
EST:     AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAG                         ATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
genomic: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAGgcaagcccgt ... ccatccccagATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
EST: gi|60344011|gb|DN210984.1|DN210984
EST:     AGTACATCATCAAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAG                         ATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
genomic: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAGgcaagcccgt ... ccatccccagATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
EST: gi|71766898|gb|DR964835.1|DR964835
EST:     AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAG                         ATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
genomic: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAGgcaagcccgt ... ccatccccagATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
EST: gi|67040711|gb|CO466966.1|CO466966
EST:     ACTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAG                         ATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
genomic: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAGgcaagcccgt ... ccatccccagATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
EST: gi|6012198|gb|AW061740.1|AW061740
EST:     AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAG                         ATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
genomic: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAGgcaagcccgt ... ccatccccagATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
EST: gi|148934217|gb|EC878238.2|EC878238
EST:     AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAG                         ATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
genomic: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAGgcaagcccgt ... ccatccccagATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
EST: gi|148981457|gb|EE027656.2|EE027656
EST:     AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAG                         ATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
genomic: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAGgcaagcccgt ... ccatccccagATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
EST: gi|101387651|gb|EB815840.1|EB815840
EST:     ATCACCCCACAGATCCAGAGGCAGACGAG                         ATCCTGTCAAAGAAAGGGGTCCTCATCCTCCCCGACATACTGGCCAACTCT
genomic: ATCACCCCACAGATCCAGAGGCAGACGAGgcaagcccgt ... ccatccccagATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
EST: gi|148974520|gb|EE025306.2|EE025306
EST:     AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAG                         ATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
genomic: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAGgcaagcccgt ... ccatccccagATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
EST: gi|6993922|gb|AW453136.1|AW453136
EST:     AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAG                         ATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGG
genomic: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAGgcaagcccgt ... ccatccccagATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGG
EST: gi|91053893|gb|EB164311.1|EB164311
EST:     AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAG                         ATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
genomic: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAGgcaagcccgt ... ccatccccagATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
EST: gi|78092009|gb|DV520383.1|DV520383
EST:     AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAG                         ATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
genomic: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAGgcaagcccgt ... ccatccccagATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
EST: gi|60394477|gb|DN227347.1|DN227347
EST:     AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAG                         ATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
genomic: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAGgcaagcccgt ... ccatccccagATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
EST: gi|211079581|gb|FL056327.1|FL056327
EST:     AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAG                         ATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
genomic: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAGgcaagcccgt ... ccatccccagATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
EST: gi|60343914|gb|DN210887.1|DN210887
EST:     CATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAG                         ATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
genomic: CATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAGgcaagcccgt ... ccatccccagATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
EST: gi|71426411|gb|DR807461.1|DR807461
EST:     AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAG                         ATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
genomic: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAGgcaagcccgt ... ccatccccagATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
EST: gi|211375022|gb|FL430803.1|FL430803
EST:     AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAG                         ATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
genomic: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAGgcaagcccgt ... ccatccccagATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
EST: gi|50330055|gb|CO525181.1|CO525181
EST:     AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAG                         ATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
genomic: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAGgcaagcccgt ... ccatccccagATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
EST: gi|86470639|gb|DY237009.1|DY237009
EST:     AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAG                         ATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
genomic: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAGgcaagcccgt ... ccatccccagATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
EST: gi|148940230|gb|EC884999.2|EC884999
EST:     AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAG                         ATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
genomic: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAGgcaagcccgt ... ccatccccagATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
EST: gi|14243831|gb|BG841522.2|BG841522
EST:     AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAG                         ATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
genomic: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAGgcaagcccgt ... ccatccccagATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
EST: gi|74245082|gb|DT652996.1|DT652996
EST:     AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAG                         ATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
genomic: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAGgcaagcccgt ... ccatccccagATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
EST: gi|148934216|gb|EC878237.2|EC878237
EST:     AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAG                         ATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
genomic: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAGgcaagcccgt ... ccatccccagATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
EST: gi|78077525|gb|DV505959.1|DV505959
EST:     AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGAGGAG                         ATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
genomic: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAGgcaagcccgt ... ccatccccagATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
EST: gi|60357158|gb|DN224131.1|DN224131
EST:     AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAG                         ATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
genomic: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAGgcaagcccgt ... ccatccccagATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
EST: gi|71328973|gb|DR801176.1|DR801176
EST:     AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAG                         ATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
genomic: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAGgcaagcccgt ... ccatccccagATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
EST: gi|211079579|gb|FL056325.1|FL056325
EST:     AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAG                         ATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
genomic: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAGgcaagcccgt ... ccatccccagATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCCAACTCT
EST: gi|5847156|gb|AW000235.1|AW000235
EST:     AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAG                         ATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCC
genomic: AGTACATCATCGAGGCTGCCAATCACCCCACAGATCCAGAGGCAGACGAGgcaagcccgt ... ccatccccagATCCTGTCAAAGAAAGGCGTCCTCATCCTCCCCGACATACTGGCC