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CTGTTGGTGAAGATCAAACACAACATTTAGAATTAACTCGTGAAATAGCTGAGCGTGTAAATAATCTTTATGGTGGAAGAAAGTGGAAGAAATTGGGAGGgtgagataaatttttgttccacgttttgcagctccagcagtagtctgtcttttactgacaattcatttatactttttgattggcag
species | Zea mays |
transcript | GRMZM2G177970_T02 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GAGCGTGTAAATAATCTTTATGGTGGAAGAAAGTGGAAGAAATTGGGAGG GAGAGGGGGTTTGCTATTTAAGEST: gi|71449704|gb|DR830754.1|DR830754
genomic: GAGCGTGTAAATAATCTTTATGGTGGAAGAAAGTGGAAGAAATTGGGAGGgtgagataaa ... tgattggcagGAGAGGGGGTTTGCTATTTAAG
EST: GAGCGTGTAAATAATCTTTATGGTGGAAGAAAGTGGAAGAAATTGGGAGG GAGAGGGGGTTTGCTATTTAAGEST: gi|50331394|gb|CO526520.1|CO526520
genomic: GAGCGTGTAAATAATCTTTATGGTGGAAGAAAGTGGAAGAAATTGGGAGGgtgagataaa ... tgattggcagGAGAGGGGGTTTGCTATTTAAG
EST: GAGCGTGTAAATAATCTTTATGGTGGAAGAAAGTGGAAGAAATTGGGAGG GAGAGGGGGTTTGCTATTTAAGEST: gi|71449703|gb|DR830753.1|DR830753
genomic: GAGCGTGTAAATAATCTTTATGGTGGAAGAAAGTGGAAGAAATTGGGAGGgtgagataaa ... tgattggcagGAGAGGGGGTTTGCTATTTAAG
EST: GAGCGTGTAAATAATCTTTATGGTGGAAGAAAGTGGAAGAAATTGGGAGG GAGAGGGGGTTTGCTATTTAAGEST: gi|32930432|gb|CF035244.1|CF035244
genomic: GAGCGTGTAAATAATCTTTATGGTGGAAGAAAGTGGAAGAAATTGGGAGGgtgagataaa ... tgattggcagGAGAGGGGGTTTGCTATTTAAG
EST: GAGCGTGTAAATAATCTTTATGGTGGAAGAAAGTGGAAGAAATTGGGAGG GAGAGGGGGTTTGCTATTTAAGEST: gi|76294199|gb|DV033767.1|DV033767
genomic: GAGCGTGTAAATAATCTTTATGGTGGAAGAAAGTGGAAGAAATTGGGAGGgtgagataaa ... tgattggcagGAGAGGGGGTTTGCTATTTAAG
EST: GAGCGTGTAAATAATCTTTATGGTGGAAGAAAGTGGAAGAAATTGGGAGG GAGAGGGGGTTTGCTATTTAAGGTTCCTGAEST: gi|32930572|gb|CF035384.1|CF035384
genomic: GAGCGTGTAAATAATCTTTATGGTGGAAGAAAGTGGAAGAAATTGGGAGGgtgagataaa ... tgattggcagGAGAGGGGGTTTGCTATTTAAGGTTCCTGA
EST: GAGCGTGTAAATAATCTTTATGGTGGAAGAAAGTGTAAGAAATTGGGAGG GAGAGGGGGTTTGCTATTTAAGEST: gi|78120428|gb|DV538812.1|DV538812
genomic: GAGCGTGTAAATAATCTTTATGGTGGAAGAAAGTGGAAGAAATTGGGAGGgtgagataaa ... tgattggcagGAGAGGGGGTTTGCTATTTAAG
EST: GAGCGTGTAAATAATCTTTATGGTGGAAGAAAGTGGAAGAAATTGGGAGG GAGAGGGGGTTTGCTATTTAAGGT
genomic: GAGCGTGTAAATAATCTTTATGGTGGAAGAAAGTGGAAGAAATTGGGAGGgtgagataaa ... tgattggcagGAGAGGGGGTTTGCTATTTAAGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGTTGGTGAAGATCAAACACAACATTTAGAATTAACTCGTGAAATAGCTGAGCGTGTAAATAATCTTTATGGTGGAAGAAAGTGGAAGAAATTGGGAGGgtgagataaatttttgttccacgttttgcagctccagcagtagtctgtcttttactgacaattcatttatactttttgattggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA